RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SNAP23O00161 211 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 LIASO43766 372 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 USP12O75317 370 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 BEST1O76090 585 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 CHRM5P08912 532 aaPredicted RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 SOX10P56693 466 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 IFI35P80217 286 aaPredicted RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 STK4Q13043 487 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 FRG1Q14331 258 aaKnown RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 GALNT3Q14435 633 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 TMEM154Q6P9G4 183 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 GPAT4Q86UL3 456 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 NEK9Q8TD19 979 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 GDPD5Q8WTR4 605 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 TIMP4Q99727 224 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 TM2D2Q9BX73 214 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 STRA6Q9BX79 667 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 MAK16Q9BXY0 300 aaKnown RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 GLIS2Q9BZE0 524 aaPredicted RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 FBRSL1Q9HCM7 1045 aaKnown RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 NFKBIL1Q9UBC1 381 aaPredicted RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 A4GNTQ9UNA3 340 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 PCDHGB5Q9Y5G0 923 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 ARAP3Q8WWN8 1544 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 PASKQ96RG2 1323 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 PCF11O94913 1555 aaKnown RBP7.81□□□□□ -1.16
LSM1-202ENST00000520286 KIF27Q86VH2 1401 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 FRMD3A2A2Y4 597 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 C1QTNF3-AMACRE9PGA6 284 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 NARSO43776 548 aaKnown RBP7.81□□□□□ -1.16
LSM1-202ENST00000520286 PAGE4O60829 102 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 PGM3O95394 542 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 NFATC1O95644 943 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 CHRNA5P30532 468 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 ARSFP54793 590 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 YWHAZP63104 245 aaKnown RBP7.81□□□□□ -1.16
LSM1-202ENST00000520286 PRAMEP78395 509 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 CEBPZQ03701 1054 aaKnown RBP7.81□□□□□ -1.16
LSM1-202ENST00000520286 ME3Q16798 604 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 CERKLQ49MI3 558 aaPredicted RBP7.81□□□□□ -1.16
LSM1-202ENST00000520286 PLEKHS1Q5SXH7 462 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 AKNAD1Q5T1N1 836 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 KRT77Q7Z794 578 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 AMIGO2Q86SJ2 522 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 ADGRF2Q8IZF7 708 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 FAM9BQ8IZU0 186 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 FAR1Q8WVX9 515 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 RITA1Q96K30 269 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 UROC1Q96N76 676 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 YME1L1Q96TA2 773 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 H2AFJQ9BTM1 129 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 AP1M1Q9BXS5 423 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 SH2D4AQ9H788 454 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 POLR1BQ9H9Y6 1135 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 MLXIPLQ9NP71 852 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 SLC17A6Q9P2U8 582 aa7.81□□□□□ -1.16
LSM1-202ENST00000520286 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.81□□□□□ -1.16
LSM1-202ENST00000520286 SMIM22K7EJ46 135 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 HEXAP06865 529 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 KLRC2P26717 231 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 GCH1P30793 250 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 NNMTP40261 264 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 GNAQP50148 359 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 CALD1Q05682 793 aaKnown RBP7.8□□□□□ -1.16
LSM1-202ENST00000520286 VEPH1Q14D04 833 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 IGFL4Q6B9Z1 124 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 SARM1Q6SZW1 724 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 ARHGAP12Q8IWW6 846 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.8□□□□□ -1.16
LSM1-202ENST00000520286 ARL14EPQ8N8R7 260 aaPredicted RBP7.8□□□□□ -1.16
LSM1-202ENST00000520286 GTF3C6Q969F1 213 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 TOR3AQ9H497 397 aa7.8□□□□□ -1.16
LSM1-202ENST00000520286 IPO11Q9UI26 975 aaKnown RBP7.8□□□□□ -1.16
LSM1-202ENST00000520286 CYP2D7A0A087X1C5 515 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 A0A0A0MQY5 61 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 A0A1W2PQ09 198 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 A0A1W2PQF6 199 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 NPIPB8E9PQR5 432 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 IFNL4K9M1U5 179 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 PLAUP00749 431 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 ADRB2P07550 413 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 IRF1P10914 325 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 SLC2A4P14672 509 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 WT1P19544 449 aaPredicted RBP7.79□□□□□ -1.16
LSM1-202ENST00000520286 HOXA7P31268 230 aaPredicted RBP7.79□□□□□ -1.16
LSM1-202ENST00000520286 CACNA2D1P54289 1103 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 KIAA1755Q5JYT7 1200 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 TXNDC8Q6A555 127 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 SLC30A6Q6NXT4 461 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 CHST9Q7L1S5 443 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 KRT74Q7RTS7 529 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 WDR5BQ86VZ2 330 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 CHSY1Q86X52 802 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 AMER2Q8N7J2 671 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 PSPC1Q8WXF1 523 aaKnown RBP7.79□□□□□ -1.16
LSM1-202ENST00000520286 JAKMIP2Q96AA8 810 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 TXLNGYQ9BZA5 131 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 HIPK3Q9H422 1215 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 CTNNAL1Q9UBT7 734 aa7.79□□□□□ -1.16
LSM1-202ENST00000520286 SERGEFQ9UGK8 458 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms