RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.04■□□□□ -0
NUP54-217ENST00000514987 IGLV3-10A0A075B6K4 115 aa15.03■□□□□ -0
NUP54-217ENST00000514987 FAM95CA0A1B0GW59 222 aa15.03■□□□□ -0
NUP54-217ENST00000514987 FAM92AA1XBS5 289 aa15.03■□□□□ -0
NUP54-217ENST00000514987 MOXD2PA6NHM9 499 aa15.03■□□□□ -0
NUP54-217ENST00000514987 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.03■□□□□ -0
NUP54-217ENST00000514987 MATN2O00339 956 aa15.03■□□□□ -0
NUP54-217ENST00000514987 TADA2AO75478 443 aa15.03■□□□□ -0
NUP54-217ENST00000514987 KRT36O76013 467 aa15.03■□□□□ -0
NUP54-217ENST00000514987 NCF2P19878 526 aaPredicted RBP15.03■□□□□ -0
NUP54-217ENST00000514987 OR1G1P47890 313 aa15.03■□□□□ -0
NUP54-217ENST00000514987 RPL14P50914 215 aaKnown RBP15.03■□□□□ -0
NUP54-217ENST00000514987 WNT3AP56704 352 aa15.03■□□□□ -0
NUP54-217ENST00000514987 AP2B1P63010 937 aa15.03■□□□□ -0
NUP54-217ENST00000514987 TRIP4Q15650 581 aaPredicted RBP15.03■□□□□ -0
NUP54-217ENST00000514987 MARC1Q5VT66 337 aa15.03■□□□□ -0
NUP54-217ENST00000514987 SNX30Q5VWJ9 437 aa15.03■□□□□ -0
NUP54-217ENST00000514987 LRRC8EQ6NSJ5 796 aa15.03■□□□□ -0
NUP54-217ENST00000514987 NEPROQ6NW34 567 aa15.03■□□□□ -0
NUP54-217ENST00000514987 ESRP1Q6NXG1 681 aaKnown RBP15.03■□□□□ -0
NUP54-217ENST00000514987 KDELC1Q6UW63 502 aa15.03■□□□□ -0
NUP54-217ENST00000514987 NAPRTQ6XQN6 538 aa15.03■□□□□ -0
NUP54-217ENST00000514987 LRRC74BQ6ZQY2 392 aa15.03■□□□□ -0
NUP54-217ENST00000514987 C14orf80Q86SX3 495 aa15.03■□□□□ -0
NUP54-217ENST00000514987 SETD3Q86TU7 594 aaPredicted RBP15.03■□□□□ -0
NUP54-217ENST00000514987 ZNF280BQ86YH2 543 aa15.03■□□□□ -0
NUP54-217ENST00000514987 SLC41A1Q8IVJ1 513 aa15.03■□□□□ -0
NUP54-217ENST00000514987 ZNF683Q8IZ20 524 aa15.03■□□□□ -0
NUP54-217ENST00000514987 ZNF781Q8N8C0 355 aa15.03■□□□□ -0
NUP54-217ENST00000514987 CCDC126Q96EE4 140 aa15.03■□□□□ -0
NUP54-217ENST00000514987 TSPAN17Q96FV3 270 aa15.03■□□□□ -0
NUP54-217ENST00000514987 TSEN34Q9BSV6 310 aaKnown RBP15.03■□□□□ -0
NUP54-217ENST00000514987 CCDC28BQ9BUN5 200 aa15.03■□□□□ -0
NUP54-217ENST00000514987 ATP13A1Q9HD20 1204 aa15.03■□□□□ -0
NUP54-217ENST00000514987 GOLGA8QA0A0J9YX86 632 aa15.02■□□□□ -0
NUP54-217ENST00000514987 E2F8A0AVK6 867 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GOLGA8OA6NCC3 632 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TARM1B6A8C7 271 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GOLGA8NF8WBI6 632 aa15.02■□□□□ -0
NUP54-217ENST00000514987 NPHS1O60500 1241 aa15.02■□□□□ -0
NUP54-217ENST00000514987 CCNT2O60583 730 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 OR4Q2P0C623 313 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GLDCP23378 1020 aa15.02■□□□□ -0
NUP54-217ENST00000514987 YWHAQP27348 245 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GABRB3P28472 473 aa15.02■□□□□ -0
NUP54-217ENST00000514987 ABCG1P45844 678 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GRIA4P48058 902 aa15.02■□□□□ -0
NUP54-217ENST00000514987 SERPINH1P50454 418 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 CLCN5P51795 746 aa15.02■□□□□ -0
NUP54-217ENST00000514987 KPNA1P52294 538 aaPredicted RBP15.02■□□□□ -0
NUP54-217ENST00000514987 NAA25Q14CX7 972 aa15.02■□□□□ -0
NUP54-217ENST00000514987 CLLU1OSQ5K130 101 aa15.02■□□□□ -0
NUP54-217ENST00000514987 MAP3K21Q5TCX8 1036 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TMCO4Q5TGY1 634 aa15.02■□□□□ -0
NUP54-217ENST00000514987 PIK3R6Q5UE93 754 aa15.02■□□□□ -0
NUP54-217ENST00000514987 C1orf146Q5VVC0 180 aa15.02■□□□□ -0
NUP54-217ENST00000514987 SEL1L3Q68CR1 1132 aa15.02■□□□□ -0
NUP54-217ENST00000514987 RIPOR1Q6ZS17 1223 aa15.02■□□□□ -0
NUP54-217ENST00000514987 ACAD11Q709F0 780 aa15.02■□□□□ -0
NUP54-217ENST00000514987 RTN4RL1Q86UN2 441 aaPredicted RBP15.02■□□□□ -0
NUP54-217ENST00000514987 MYLK4Q86YV6 388 aaPredicted RBP15.02■□□□□ -0
NUP54-217ENST00000514987 KIRREL3Q8IZU9 778 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TMEM151AQ8N4L1 468 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TEX26Q8N6G2 289 aa15.02■□□□□ -0
NUP54-217ENST00000514987 ACTRT2Q8TDY3 377 aa15.02■□□□□ -0
NUP54-217ENST00000514987 JADE3Q92613 823 aa15.02■□□□□ -0
NUP54-217ENST00000514987 ZNF333Q96JL9 665 aa15.02■□□□□ -0
NUP54-217ENST00000514987 CNDP1Q96KN2 507 aa15.02■□□□□ -0
NUP54-217ENST00000514987 GLT1D1Q96MS3 346 aa15.02■□□□□ -0
NUP54-217ENST00000514987 MRPL57Q9BQC6 102 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 OXCT2Q9BYC2 517 aaPredicted RBP15.02■□□□□ -0
NUP54-217ENST00000514987 MRPL46Q9H2W6 279 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 RETREG1Q9H6L5 497 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TCF7L2Q9NQB0 619 aa15.02■□□□□ -0
NUP54-217ENST00000514987 TLR8Q9NR97 1041 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 MPP6Q9NZW5 540 aa15.02■□□□□ -0
NUP54-217ENST00000514987 SLC7A8Q9UHI5 535 aa15.02■□□□□ -0
NUP54-217ENST00000514987 FBXO5Q9UKT4 447 aa15.02■□□□□ -0
NUP54-217ENST00000514987 ARHGAP26Q9UNA1 814 aa15.02■□□□□ -0
NUP54-217ENST00000514987 NYNRINQ9P2P1 1898 aaKnown RBP15.02■□□□□ -0
NUP54-217ENST00000514987 GOLGA8TH3BQL2 631 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 PHGDHO43175 533 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 PEX11BO96011 259 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 THRAP10827 490 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 ARNTP27540 789 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 PGFP49763 221 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 DNAJB13P59910 316 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 IL10RBQ08334 325 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 SEPT6Q14141 434 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 CNGA3Q16281 694 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 PARP15Q460N3 678 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 MS4A13Q5J8X5 152 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 VARS2Q5ST30 1063 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 TSTD2Q5T7W7 516 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 ZNF280DQ6N043 979 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 ATG14Q6ZNE5 492 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 ADGRG6Q86SQ4 1221 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 FSTL5Q8N475 847 aaPredicted RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 ACVR1CQ8NER5 493 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 FBXO27Q8NI29 283 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms