RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ANKRD9Q96BM1 317 aaPredicted RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 TIFAQ96CG3 184 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 CLK4Q9HAZ1 481 aaKnown RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 LRFN1Q9P244 771 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 A0A0A0MQY5 61 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 NPIPB11E5RHQ5 1161 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 SYN3O14994 580 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 STRNO43815 780 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 TIPRLO75663 272 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 VNN2O95498 520 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 TFRCP02786 760 aaKnown RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 MYF6P23409 242 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 ATPAF1Q5TC12 328 aaPredicted RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 IPO4Q8TEX9 1081 aaKnown RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 TRIB2Q92519 343 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 MOV10L1Q9BXT6 1211 aaKnown RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 TP63Q9H3D4 680 aaPredicted RBP2.95□□□□□ -1.94
NUP54-208ENST00000508604 BAG5Q9UL15 447 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 PHTF1Q9UMS5 762 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 C16orf97H3BN30 126 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 TNFSF4P23510 183 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 IL15P40933 162 aaPredicted RBP2.94□□□□□ -1.94
NUP54-208ENST00000508604 RPS6KA3P51812 740 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 TNFAIP1Q13829 316 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 KIAA1324Q6UXG2 1013 aaKnown RBP2.94□□□□□ -1.94
NUP54-208ENST00000508604 AADATQ8N5Z0 425 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 OR13A1Q8NGR1 328 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 STT3BQ8TCJ2 826 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 RSC1A1Q92681 617 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 LRFN5Q96NI6 719 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 PIGSQ96S52 555 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 RBM4Q9BWF3 364 aaKnown RBP2.94□□□□□ -1.94
NUP54-208ENST00000508604 BRD8Q9H0E9 1235 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 FAM50BQ9Y247 325 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 SNX9Q9Y5X1 595 aa2.94□□□□□ -1.94
NUP54-208ENST00000508604 TIMM23O14925 209 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 AMBPP02760 352 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 CYP4B1P13584 511 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 SLC5A1P13866 664 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 MCM3P25205 808 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 SSTR2P30874 369 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 BTBD16Q32M84 506 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 LCE3CQ5T5A8 94 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 C19orf48Q6RUI8 117 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 GALNT7Q86SF2 657 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 TRIM74Q86UV6 250 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 TRIM73Q86UV7 250 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 SCN4BQ8IWT1 228 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 GPT2Q8TD30 523 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 ATOH1Q92858 354 aaPredicted RBP2.93□□□□□ -1.94
NUP54-208ENST00000508604 ZFP57Q9NU63 452 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 DDX43Q9NXZ2 648 aaKnown RBP2.93□□□□□ -1.94
NUP54-208ENST00000508604 SLC39A10Q9ULF5 831 aa2.93□□□□□ -1.94
NUP54-208ENST00000508604 hDV102S1A0JD36 115 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 NPIPB13A6NJU9 1138 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 NPIPB5A8MRT5 1133 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 NPIPB4C9JG80 1138 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 HNRNPRO43390 633 aaKnown RBP2.92□□□□□ -1.94
NUP54-208ENST00000508604 NCK2O43639 380 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 CBX6O95503 412 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 PRSS1P07477 247 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 CLCN3P51790 818 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 RPS6KA2Q15349 733 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 NAPEPLDQ6IQ20 393 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 FAM122CQ6P4D5 195 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 EPHX4Q8IUS5 362 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 METTL27Q8N6F8 245 aaPredicted RBP2.92□□□□□ -1.94
NUP54-208ENST00000508604 SCAIQ8N9R8 606 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 DMBX1Q8NFW5 382 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 C2CD4CQ8TF44 421 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 MUL1Q969V5 352 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ARRDC3Q96B67 414 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 MSTO1Q9BUK6 570 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ZNF696Q9H7X3 374 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 GRHL1Q9NZI5 618 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ZNF224Q9NZL3 707 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 OR6C3Q9NZP0 311 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 FBXO40Q9UH90 709 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 TP53BP1Q12888 1972 aaPredicted RBP2.92□□□□□ -1.94
NUP54-208ENST00000508604 IL1AP01583 271 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 DCTDP32321 178 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 HSPA7P48741 367 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 FAM27E3Q08E93 113 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ZBTB17Q13105 803 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 MPEG1Q2M385 716 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 TRIM60Q495X7 471 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 COBLL1Q53SF7 1204 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 IZUMO3Q5VZ72 239 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 WDR75Q8IWA0 830 aaKnown RBP2.92□□□□□ -1.94
NUP54-208ENST00000508604 LYG1Q8N1E2 194 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ZNF441Q8N8Z8 693 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 FIG4Q92562 907 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 OTULINQ96BN8 352 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 ACAD9Q9H845 621 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 UPB1Q9UBR1 384 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 SIX4Q9UIU6 781 aa2.92□□□□□ -1.94
NUP54-208ENST00000508604 MORC2Q9Y6X9 1032 aaPredicted RBP2.92□□□□□ -1.94
NUP54-208ENST00000508604 A0A0G2JPF8 293 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 HNRNPCL3B7ZW38 293 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 HNRNPCL1O60812 293 aaKnown RBP2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms