RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CYP26C1Q6V0L0 522 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 DNAJB7Q7Z6W7 309 aaPredicted RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 PHYKPLQ8IUZ5 450 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 LILRA3Q8N6C8 439 aaPredicted RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 ENGASEQ8NFI3 743 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 FGF14Q92915 247 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 ANKRD36BP1Q96IX9 119 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 FNBP1Q96RU3 617 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 MMS19Q96T76 1030 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 SEPT5Q99719 369 aaPredicted RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 MRPL45Q9BRJ2 306 aaKnown RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 PI4K2AQ9BTU6 479 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 SPATA5L1Q9BVQ7 753 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 PITHD1Q9GZP4 211 aaPredicted RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 ENKD1Q9H0I2 346 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 ZCWPW1Q9H0M4 648 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 MTG2Q9H4K7 406 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 KIAA1586Q9HCI6 787 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 ZNF334Q9HCZ1 680 aaPredicted RBP4.83□□□□□ -1.64
NUP54-206ENST00000508465 SYBUQ9NX95 663 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 EPS15L1Q9UBC2 864 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 GTF3C4Q9UKN8 822 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 ITGA11Q9UKX5 1188 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 CDH7Q9ULB5 785 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 CA14Q9ULX7 337 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 NUMBLQ9Y6R0 609 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 SCN1AP35498 2009 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 MYH15Q9Y2K3 1946 aa4.83□□□□□ -1.64
NUP54-206ENST00000508465 C2orf16Q68DN1 1984 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MTCL1Q9Y4B5 1905 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 MTMR11A4FU01 709 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 LRRIQ3A6PVS8 624 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 CLDN5O00501 218 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 PDXKO00764 312 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 KIAA0391O15091 583 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 CALUO43852 315 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 NCR1O76036 304 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 CLSTN1O94985 981 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 APOL3O95236 402 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 VNN1O95497 513 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 TRIM49P0CI25 452 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 TRIM49CP0CI26 452 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 HAPLN1P10915 354 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 CD72P21854 359 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 HOXA9P31269 272 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 GNL1P36915 607 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 PNPLA4P41247 253 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 PRCPP42785 496 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MECP2P51608 486 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 SEC24CP53992 1094 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SNRPFP62306 86 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 SIGLEC14Q08ET2 396 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MYO1EQ12965 1108 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MRPL49Q13405 166 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 BIRC3Q13489 604 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 TRPC3Q13507 836 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MYBPC3Q14896 1274 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 TEAD2Q15562 447 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 FAM78AQ5JUQ0 283 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 C1orf220Q5T0J3 134 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 STXBP5Q5T5C0 1151 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 CYP4A22Q5TCH4 519 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 ANKRD40Q6AI12 368 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SPOPLQ6IQ16 392 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SCARA5Q6ZMJ2 495 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 PDZD4Q76G19 769 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 DOK3Q7L591 496 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 KANSL1Q7Z3B3 1105 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 FGD2Q7Z6J4 655 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 PLXDC1Q8IUK5 500 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 WDR49Q8IV35 697 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SCN4BQ8IWT1 228 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 UBALD2Q8IYN6 164 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 DCP1BQ8IZD4 617 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 ADGRF2Q8IZF7 708 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 ELMOD1Q8N336 334 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 LRRC52Q8N7C0 313 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 KIAA1958Q8N8K9 716 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 CHST14Q8NCH0 376 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 OR6B3Q8NGW1 331 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 TTC8Q8TAM2 541 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 GOLGA5Q8TBA6 731 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 PARD3BQ8TEW8 1205 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 KBTBD7Q8WVZ9 684 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 LINC00476Q8WZB0 136 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SLC9A6Q92581 669 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 CCDC47Q96A33 483 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 MRFAP1L1Q96HT8 127 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 LRRC3BQ96PB8 259 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 CGRRF1Q99675 332 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 SNX25Q9H3E2 840 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MFSD1Q9H3U5 465 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 DPEP3Q9H4B8 488 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 GDAP2Q9NXN4 497 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 DDX43Q9NXZ2 648 aaKnown RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 IGSF9Q9P2J2 1179 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 MAGED2Q9UNF1 606 aaPredicted RBP4.82□□□□□ -1.64
NUP54-206ENST00000508465 FRMD4BQ9Y2L6 1034 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 YIPF1Q9Y548 306 aa4.82□□□□□ -1.64
NUP54-206ENST00000508465 NME7Q9Y5B8 376 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms