RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SPANXN3Q5MJ09 141 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 GRTP1Q5TC63 336 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 LPCAT1Q8NF37 534 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 FNIP1Q8TF40 1166 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 CSPG4P5Q96PW8 444 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 EBNA1BP2Q99848 306 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TMEM106CQ9BVX2 250 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 BIRC5O15392 142 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 DDHD2O94830 711 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 WEE1P30291 646 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 VWA5B1Q5TIE3 1220 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 TXNRD3NBQ6F5E7 133 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 C10orf107Q8IVU9 208 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ADCY4Q8NFM4 1077 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 NKD2Q969F2 451 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SH3KBP1Q96B97 665 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ZFYVE19Q96K21 471 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 TWNKQ96RR1 684 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 VAT1Q99536 393 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 EURLQ9NYK6 297 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 POMPQ9Y244 141 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 MYH3P11055 1940 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 LINC00854A0A1B0GVQ3 168 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 MYO1GB0I1T2 1018 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 TTKP33981 857 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 GRIA3P42263 894 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 DLG1Q12959 904 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 RAP1GAP2Q684P5 730 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CAMK1DQ8IU85 385 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 DGCR6LQ9BY27 220 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CLK4Q9HAZ1 481 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 IRS2Q9Y4H2 1338 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SOAT2O75908 522 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 OR4Q2P0C623 313 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ASPAP45381 313 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 RPL14P50914 215 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SP3Q02447 781 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ARHGAP1Q07960 439 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 KLF10Q13118 480 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SLC25A52Q3SY17 297 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ASRGL1Q7L266 308 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 BRI3BPQ8WY22 251 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SLC7A6OSQ96CW6 309 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CERS2Q96G23 380 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SERAC1Q96JX3 654 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CPNE1Q99829 537 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ASPSCR1Q9BZE9 553 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 TRNAU1APQ9NX07 287 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CRYL1Q9Y2S2 319 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 PTGES3LE9PB15 166 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 PMM2O15305 246 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 PAPSS1O43252 624 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 ATXN1P54253 815 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 NFYCQ13952 458 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CCDC85BQ15834 202 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 NADK2Q4G0N4 442 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 SAMD4BQ5PRF9 694 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 FAR2Q96K12 515 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 TBL1YQ9BQ87 522 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 C1orf50Q9BV19 199 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 OSBPL11Q9BXB4 747 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 CNGB3Q9NQW8 809 aa16.48■□□□□ 0.23
CCDC88B-209ENST00000494080 MFN2O95140 757 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CCL23P55773 120 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 LILRA4P59901 499 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CHRNB3Q05901 458 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 UTS2BQ765I0 119 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 PYROXD2Q8N2H3 581 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 TOP6BLQ8N6T0 577 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 BORCS5Q969J3 196 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 RNF208Q9H0X6 261 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 WDR55Q9H6Y2 383 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 HMG20AQ9NP66 347 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 SSU72Q9NP77 194 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 VPS26AO75436 327 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 PIK3R1P27986 724 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 ADRA1BP35368 520 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 MAXP61244 160 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 PSME3P61289 254 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CYP51A1Q16850 503 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 BORCS6Q96GS4 357 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 EBF4Q9BQW3 602 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 STN1Q9H668 368 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 PADI3Q9ULW8 664 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 PRPF19Q9UMS4 504 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 ZNF197O14709 1029 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 RGS20O76081 388 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 ATP6V1B2P21281 511 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 NRLP54845 237 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CHADLQ6NUI6 762 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 SPATA17Q96L03 361 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 C9orf16Q9BUW7 83 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 EXOSC4Q9NPD3 245 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 MPP6Q9NZW5 540 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CACNG4Q9UBN1 327 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 VTI1BQ9UEU0 232 aa16.47■□□□□ 0.23
CCDC88B-209ENST00000494080 CRTAMO95727 393 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 POU5F1Q01860 360 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 NOMO2Q5JPE7 1267 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms