RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SYNE3Q6ZMZ3 975 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 SMIM29Q86T20 159 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 PATL1Q86TB9 770 aaKnown RBP4.36□□□□□ -1.71
SMC4-223ENST00000493695 ZNF114Q8NC26 417 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 GPT2Q8TD30 523 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 C2CD4CQ8TF44 421 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 SORCS1Q8WY21 1168 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 ATOH1Q92858 354 aaPredicted RBP4.36□□□□□ -1.71
SMC4-223ENST00000493695 TMEM41AQ96HV5 264 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 FRG2BQ96QU4 278 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 MST1RQ04912 1400 aa4.36□□□□□ -1.71
SMC4-223ENST00000493695 HNRNPCL2B2RXH8 293 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 KIF1CO43896 1103 aaKnown RBP4.35□□□□□ -1.71
SMC4-223ENST00000493695 ATP1A1P05023 1023 aaKnown RBP4.35□□□□□ -1.71
SMC4-223ENST00000493695 VEGFCP49767 419 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 ILF3Q12906 894 aaKnown RBP eCLIP4.35□□□□□ -1.71
SMC4-223ENST00000493695 CALCRLQ16602 461 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 ATPAF1Q5TC12 328 aaPredicted RBP4.35□□□□□ -1.71
SMC4-223ENST00000493695 ZNF772Q68DY9 489 aaPredicted RBP4.35□□□□□ -1.71
SMC4-223ENST00000493695 TUBA1AQ71U36 451 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 GALNT15Q8N3T1 639 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 RFWD2Q8NHY2 731 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 HDAC7Q8WUI4 952 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 SCMH1Q96GD3 660 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 DUX3Q96PT4 197 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 TUBA1CQ9BQE3 449 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 EGLN1Q9GZT9 426 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 CLPBQ9H078 707 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 MMP28Q9H239 520 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 ARFGAP3Q9NP61 516 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 BAG5Q9UL15 447 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 GAB2Q9UQC2 676 aa4.35□□□□□ -1.71
SMC4-223ENST00000493695 A0A087WV62 115 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 A0A096LPK6 155 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 NPIPB13A6NJU9 1138 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 NPIPB5A8MRT5 1133 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 EFCAB8A8MWE9 144 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 NPIPB4C9JG80 1138 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 IFRD1O00458 451 aaPredicted RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 TIMM23O14925 209 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 STRNO43815 780 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 HEXIM1O94992 359 aaKnown RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 APOHP02749 345 aaPredicted RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 LYL1P12980 280 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 CYP4B1P13584 511 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 SSTR2P30874 369 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 GLIPR1P48060 266 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 TBRG1Q3YBR2 411 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 FAM83BQ5T0W9 1011 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 C10orf62Q5T681 223 aaPredicted RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 SLC26A9Q7LBE3 791 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 TRIM74Q86UV6 250 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 TRIM73Q86UV7 250 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 RBFAQ8N0V3 343 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 ENAHQ8N8S7 591 aaPredicted RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 ZNF485Q8NCK3 441 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 ARRDC3Q96B67 414 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 PGLYRP2Q96PD5 576 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 ARPC5LQ9BPX5 153 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 TP63Q9H3D4 680 aaPredicted RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 HERC5Q9UII4 1024 aaKnown RBP4.34□□□□□ -1.71
SMC4-223ENST00000493695 LZTS1Q9Y250 596 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 SNX9Q9Y5X1 595 aa4.34□□□□□ -1.71
SMC4-223ENST00000493695 IGHV4OR15-8A0A075B7B6 117 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 hDV102S1A0JD36 115 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 TARSL2A2RTX5 802 aaKnown RBP4.33□□□□□ -1.72
SMC4-223ENST00000493695 CHL1O00533 1208 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 DHRS4L1P0CG22 281 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 GYS1P13807 737 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 ANOS1P23352 680 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 YWHAQP27348 245 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 TNFAIP2Q03169 654 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 TROAPQ12815 778 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 NCAPH2Q6IBW4 605 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 NEK10Q6ZWH5 1172 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 TMC8Q8IU68 726 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 SCN4BQ8IWT1 228 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 KLHDC8BQ8IXV7 354 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 SCAIQ8N9R8 606 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 ZNF385AQ96PM9 386 aaKnown RBP4.33□□□□□ -1.72
SMC4-223ENST00000493695 TEFMQ96QE5 360 aaKnown RBP4.33□□□□□ -1.72
SMC4-223ENST00000493695 PIGSQ96S52 555 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 CRB3Q9BUF7 120 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 TRMT61BQ9BVS5 477 aaKnown RBP4.33□□□□□ -1.72
SMC4-223ENST00000493695 CLK4Q9HAZ1 481 aaKnown RBP4.33□□□□□ -1.72
SMC4-223ENST00000493695 CDC23Q9UJX2 597 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 OSGIN2Q9Y236 505 aa4.33□□□□□ -1.72
SMC4-223ENST00000493695 GOLGA6L3A6NEY3 463 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 AQP12BA6NM10 295 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 TPD52L2O43399 206 aaKnown RBP4.32□□□□□ -1.72
SMC4-223ENST00000493695 FGF17O60258 216 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 EIF3JO75822 258 aaKnown RBP4.32□□□□□ -1.72
SMC4-223ENST00000493695 CFC1BP0CG36 223 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 CFC1P0CG37 223 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 TECP42680 631 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 GPR12P47775 334 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 CLCN3P51790 818 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 ZNF132P52740 706 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 C1orf228Q6PIY5 440 aa4.32□□□□□ -1.72
SMC4-223ENST00000493695 SYTL1Q8IYJ3 562 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms