RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SORT1Q99523 831 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 SIKE1Q9BRV8 207 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 HIPK3Q9H422 1215 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 VPS45Q9NRW7 570 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 MICAL3Q7RTP6 2002 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 G3V2L1 256 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 TACR2P21452 398 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 KCNQ1P51787 676 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 KPNA1P52294 538 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 IL10RBQ08334 325 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 CTBP1Q13363 440 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 ITGA9Q13797 1035 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 SEPT6Q14141 434 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 PARP15Q460N3 678 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 PRKD2Q9BZL6 878 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 TLE6Q9H808 572 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 ANKRD6Q9Y2G4 727 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 RPL17P18621 184 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 PAMP19021 973 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 MAPKAPK2P49137 400 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 SERINC3Q13530 473 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 ARMC3Q5W041 872 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 LONP2Q86WA8 852 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 PGBD5Q8N414 524 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 NSMCE1Q8WV22 266 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 VN1R3Q9BXE9 311 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 C1QTNF1Q9BXJ1 281 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 NMRAL1Q9HBL8 299 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 ARMCX1Q9P291 453 aa21.36■■□□□ 1.01
CCDC88B-208ENST00000492980 OR1E1P30953 314 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 ACVRL1P37023 503 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC1A2P43004 574 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 ABCE1P61221 599 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 MTA1Q13330 715 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 USP10Q14694 798 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 RAPH1Q70E73 1250 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 WDR75Q8IWA0 830 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 TADA1Q96BN2 335 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 RANBP9Q96S59 729 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 EBF4Q9BQW3 602 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 PPP1R12CQ9BZL4 782 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 ATP5BP06576 529 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 CALB2P22676 271 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 OR1D2P34982 312 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 HARS2P49590 506 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 SERPINH1P50454 418 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 ATN1P54259 1190 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 YBEYP58557 167 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 USP41Q3LFD5 358 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 DEFB128Q7Z7B8 93 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC41A1Q8IVJ1 513 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 MFSD6LQ8IWD5 586 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 C2CD4AQ8NCU7 369 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 ARRDC2Q8TBH0 407 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 CDK5RAP1Q96SZ6 601 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 MIPEPQ99797 713 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 TLK1Q9UKI8 766 aa21.35■■□□□ 1.01
CCDC88B-208ENST00000492980 TTC24A2A3L6 582 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 HEATR9A2RTY3 570 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 PHGDHO43175 533 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 CCDC22O60826 627 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC35E2BP0CK96 405 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 SAT1P21673 171 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 ALDH7A1P49419 539 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 PGGT1BP53609 377 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 MSLNQ13421 630 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 THOC5Q13769 683 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 RNF168Q8IYW5 571 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 PPP4R1Q8TF05 950 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 CEP295NLQ96MC4 621 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 DNMT3LQ9UJW3 386 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 OGDHLQ9ULD0 1010 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 BACE2Q9Y5Z0 518 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 CAPN14A8MX76 684 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 F5H5T6 163 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 UPP2O95045 317 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 C5orf22Q49AR2 442 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 ZNF470Q6ECI4 717 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 LGI2Q8N0V4 545 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 FAM167BQ9BTA0 163 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 CWH43Q9H720 699 aa21.34■■□□□ 1.01
CCDC88B-208ENST00000492980 PRAMEF11O60813 436 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC6A4P31645 630 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 ATP5C1P36542 298 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 AVPR1AP37288 418 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 ETFBP38117 255 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 POLD2P49005 469 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 TUBB3Q13509 450 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 LBRQ14739 615 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 TSTD2Q5T7W7 516 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 SNX30Q5VWJ9 437 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 ANKRD33Q7Z3H0 272 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 MAVSQ7Z434 540 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 FAM13CQ8NE31 585 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 BTBD10Q9BSF8 475 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 STN1Q9H668 368 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 PNPOQ9NVS9 261 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 PCDHB12Q9Y5F1 795 aa21.33■■□□□ 1.01
CCDC88B-208ENST00000492980 CHD5Q8TDI0 1954 aa21.33■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms