RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 FLRT2O43155 660 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 PRPSAP2O60256 369 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 ADRB3P13945 408 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 PRLRP16471 622 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 NXPH1P58417 271 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 SHBQ15464 509 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 ZNF284Q2VY69 593 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 HORMAD1Q86X24 394 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 MFSD2AQ8NA29 543 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 ELF4Q99607 663 aaPredicted RBP25.4■■□□□ 1.66
HMGN1-217ENST00000489072 THAP2Q9H0W7 228 aa25.4■■□□□ 1.66
HMGN1-217ENST00000489072 IGF2RP11717 2491 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 EIF3CLB5ME19 914 aaKnown RBP25.39■■□□□ 1.66
HMGN1-217ENST00000489072 KRIT1O00522 736 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 SLC31A1O15431 190 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 PCDHGA12O60330 932 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 DFNA5O60443 496 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 TCF4P15884 667 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 SNRPD1P62314 119 aaKnown RBP25.39■■□□□ 1.66
HMGN1-217ENST00000489072 MYLK3Q32MK0 819 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 SLC45A4Q5BKX6 768 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 SEL1L3Q68CR1 1132 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 VPS36Q86VN1 386 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 SPATS2Q86XZ4 545 aaKnown RBP25.39■■□□□ 1.66
HMGN1-217ENST00000489072 RHBDD1Q8TEB9 315 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 CELF6Q96J87 481 aaKnown RBP25.39■■□□□ 1.66
HMGN1-217ENST00000489072 EIF3CQ99613 913 aaKnown RBP25.39■■□□□ 1.66
HMGN1-217ENST00000489072 GDF3Q9NR23 364 aa25.39■■□□□ 1.66
HMGN1-217ENST00000489072 PRAMEF26H0Y7S4 382 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 HYAL3O43820 417 aaPredicted RBP25.38■■□□□ 1.65
HMGN1-217ENST00000489072 PCDH8O95206 1070 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 IL1R2P27930 398 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 SUZ12Q15022 739 aaKnown RBP25.38■■□□□ 1.65
HMGN1-217ENST00000489072 TMEM259Q4ZIN3 620 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 INO80DQ53TQ3 878 aaPredicted RBP25.38■■□□□ 1.65
HMGN1-217ENST00000489072 PPP6R3Q5H9R7 873 aaPredicted RBP25.38■■□□□ 1.65
HMGN1-217ENST00000489072 FBXL19Q6PCT2 694 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 RFX8Q6ZV50 586 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 GLRX5Q86SX6 157 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 TMEM145Q8NBT3 493 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 CASKIN2Q8WXE0 1202 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 LRIG1Q96JA1 1093 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 MYOCQ99972 504 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 SCNM1Q9BWG6 230 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 PDFQ9HBH1 243 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 FADS3Q9Y5Q0 445 aa25.38■■□□□ 1.65
HMGN1-217ENST00000489072 ARID1BQ8NFD5 2236 aaPredicted RBP25.37■■□□□ 1.65
HMGN1-217ENST00000489072 C16orf96A6NNT2 1141 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 POP4O95707 220 aaKnown RBP25.37■■□□□ 1.65
HMGN1-217ENST00000489072 UGT2B4P06133 528 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 FTH1P19P0C7X4 201 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 ERCC2P18074 760 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 PCK1P35558 622 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 ABL2P42684 1182 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 NDST2P52849 883 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 CYTH1Q15438 398 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 NFKBIBQ15653 356 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 ZNF805Q5CZA5 627 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 IQCHQ86VS3 1027 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 PSTKQ8IV42 348 aaKnown RBP25.37■■□□□ 1.65
HMGN1-217ENST00000489072 ARHGEF26Q96DR7 871 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 BTBD6Q96KE9 485 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 GDAP1L1Q96MZ0 367 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 SLC39A8Q9C0K1 460 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 TSPY26PQ9H489 355 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 FZD3Q9NPG1 666 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 LHX3Q9UBR4 397 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 NENFQ9UMX5 172 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.37■■□□□ 1.651e-14■■■□□ 15.4
HMGN1-217ENST00000489072 CACNA1BQ00975 2339 aa25.37■■□□□ 1.65
HMGN1-217ENST00000489072 KMT2BQ9UMN6 2715 aaPredicted RBP25.36■■□□□ 1.65
HMGN1-217ENST00000489072 J3KR12 359 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 CYP1A2P05177 515 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 HNRNPH3P31942 346 aaKnown RBP25.36■■□□□ 1.65
HMGN1-217ENST00000489072 RHOAP61586 193 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 STAT4Q14765 748 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 ACAP1Q15027 740 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 AFMIDQ63HM1 303 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 ALKBH5Q6P6C2 394 aaKnown RBP25.36■■□□□ 1.65
HMGN1-217ENST00000489072 SLCO6A1Q86UG4 719 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 GATAD2AQ86YP4 633 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 ARHGAP12Q8IWW6 846 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 NPWQ8N729 165 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 KLHL32Q96NJ5 620 aa25.36■■□□□ 1.65
HMGN1-217ENST00000489072 CWC15Q9P013 229 aaKnown RBP25.36■■□□□ 1.65
HMGN1-217ENST00000489072 UBA2Q9UBT2 640 aaPredicted RBP25.36■■□□□ 1.65
HMGN1-217ENST00000489072 SPINT1O43278 529 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 DAPK3O43293 454 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 AP1G1O43747 822 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 PRAMEF11O60813 436 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 TPM3P06753 285 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 GRK6P43250 576 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 PAPOLAP51003 745 aaKnown RBP25.35■■□□□ 1.65
HMGN1-217ENST00000489072 FGL2Q14314 439 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 SMTNL2Q2TAL5 461 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 CCDC122Q5T0U0 273 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 CHCHD4Q8N4Q1 142 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 PNPLA1Q8N8W4 532 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 NCAPGQ9BPX3 1015 aa25.35■■□□□ 1.65
HMGN1-217ENST00000489072 NUP85Q9BW27 656 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms