RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 NME3Q13232 169 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 MTA1Q13330 715 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ENPP2Q13822 863 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 IFI16Q16666 785 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 ARL13BQ3SXY8 428 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 KCNT1Q5JUK3 1230 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 PRAMEF14Q5SWL7 426 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 TMEM215Q68D42 235 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 KLHDC10Q6PID8 442 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 SERPINA13PQ6UXR4 307 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 MON1BQ7L1V2 547 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 SLC26A9Q7LBE3 791 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ANKS1BQ7Z6G8 1248 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ADAT2Q7Z6V5 191 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 SCD5Q86SK9 330 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 DENND1CQ8IV53 801 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 RHOT2Q8IXI1 618 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 C3orf20Q8ND61 904 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 DDI1Q8WTU0 396 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 CYB5D2Q8WUJ1 264 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 PIWIL1Q96J94 861 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 SERPINB11Q96P15 392 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 DDX50Q9BQ39 737 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 SYT11Q9BT88 431 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 WDCPQ9H6R7 721 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 FAM204AQ9H8W3 233 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 TM9SF3Q9HD45 589 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 METTL5Q9NRN9 209 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.98□□□□□ -0.977e-6■■■■□ 21.9
USP4-213ENST00000488520 TAS2R14Q9NYV8 317 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 COX16Q9P0S2 106 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 DKK4Q9UBT3 224 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 INTUQ9ULD6 942 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 NAALADL1Q9UQQ1 740 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 HBS1LQ9Y450 684 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 PCDHGB2Q9Y5G2 931 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 PCDHA13Q9Y5I0 950 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 COL6A6A6NMZ7 2263 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 A0A087WV48 116 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 M0QYT0 321 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 CBX4O00257 560 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 NPC1O15118 1278 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TSPAN3O60637 253 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 SIN3BO75182 1162 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 DAB1O75553 588 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TRUB2O95900 331 aaKnown RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 PENKP01210 267 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 IGLV3-19P01714 112 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 APOEP02649 317 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 CYBBP04839 570 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 HOXB4P17483 251 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 GPD1P21695 349 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 CHKAP35790 457 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 SSR1P43307 286 aaKnown RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 SLC11A2P49281 568 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 SULT1E1P49888 294 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TBX4P57082 545 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 MAMLD1Q13495 774 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TAF5Q15542 800 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 ASTE1Q2TB18 679 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 SLC25A52Q3SY17 297 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 FNDC3BQ53EP0 1204 aaKnown RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 ODF2Q5BJF6 829 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 SCYL2Q6P3W7 929 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 OLFML1Q6UWY5 402 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 CHSY3Q70JA7 882 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 ARCQ7LC44 396 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 GATAD2AQ86YP4 633 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 CCDC117Q8IWD4 279 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 ATP6V0D2Q8N8Y2 350 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 RXFP2Q8WXD0 754 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 BIRC7Q96CA5 298 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TRIM44Q96DX7 344 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 MCEEQ96PE7 176 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 NUP85Q9BW27 656 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 THAP2Q9H0W7 228 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 DDIT4Q9NX09 232 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 UVRAGQ9P2Y5 699 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 TJP2Q9UDY2 1190 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 IP6K2Q9UHH9 426 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 SFMBT1Q9UHJ3 866 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 AGO1Q9UL18 857 aaKnown RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.97□□□□□ -0.97
USP4-213ENST00000488520 TRPM6Q9BX84 2022 aa8.97□□□□□ -0.97
USP4-213ENST00000488520 ELOA3CA0A087WX78 387 aaPredicted RBP8.96□□□□□ -0.98
USP4-213ENST00000488520 FAM47DPA6NHR8 397 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 ELOA3DA6NLF2 546 aaPredicted RBP8.96□□□□□ -0.98
USP4-213ENST00000488520 ZSCAN12O43309 604 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 KRT86O43790 486 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 LCA5LO95447 670 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 SEMA4FO95754 770 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 CYP1A2P05177 515 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 CCDC175P0C221 793 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 JUPP14923 745 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 PSMA2P25787 234 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 CCR1P32246 355 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 RFC1P35251 1148 aaPredicted RBP8.96□□□□□ -0.98
USP4-213ENST00000488520 ARHGAP25P42331 645 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 GRK6P43250 576 aa8.96□□□□□ -0.98
USP4-213ENST00000488520 CCT8P50990 548 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms