RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 SYNE3Q6ZMZ3 975 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 PARS2Q7L3T8 475 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 NIPA1Q7RTP0 329 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 RBM23Q86U06 439 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 SUGP1Q8IWZ8 645 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 THNSL1Q8IYQ7 743 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 LRRC71Q8N4P6 559 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 CPA6Q8N4T0 437 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 ZNF713Q8N859 430 aaPredicted RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 COLGALT1Q8NBJ5 622 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 PRSS33Q8NF86 280 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 RPGRIP1Q96KN7 1286 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 NEK1Q96PY6 1258 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 GTPBP4Q9BZE4 634 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 ASPSCR1Q9BZE9 553 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 LSG1Q9H089 658 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 SIK2Q9H0K1 926 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 CWH43Q9H720 699 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 ELAC1Q9H777 363 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 AGO4Q9HCK5 861 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 LMBRD1Q9NUN5 540 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 TYW1Q9NV66 732 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 PNPOQ9NVS9 261 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 RBM28Q9NW13 759 aaKnown RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 TMEM161AQ9NX61 479 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 TUBA8Q9NY65 449 aaPredicted RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 ZNF580Q9UK33 172 aa4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 BARX2Q9UMQ3 279 aaPredicted RBP4.43□□□□□ -1.7
SNRNP40-205ENST00000486941 SMCO2A6NFE2 343 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 PER2O15055 1255 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 SLC16A6O15403 523 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 MAGEB2O15479 319 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CSPG5O95196 566 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 ONECUT2O95948 504 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CCNE2O96020 404 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CYP3A4P08684 503 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 HOXB6P17509 224 aaKnown RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 RXRAP19793 462 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 AVPR2P30518 371 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CCKBRP32239 447 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 PXNP49023 591 aaPredicted RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 NAPAP54920 295 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 LOXL3P58215 753 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 KRT17Q04695 432 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CYP1B1Q16678 543 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 RNASE12Q5GAN4 147 aaKnown RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 EMC10Q5UCC4 262 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 RUSC1-AS1Q66K80 236 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 SFRP4Q6FHJ7 346 aaPredicted RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 SWSAP1Q6NVH7 229 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 ANKRD54Q6NXT1 300 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 MIS18BP1Q6P0N0 1132 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 MICU3Q86XE3 530 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 SMAP1Q8IYB5 467 aaPredicted RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 VN1R2Q8NFZ6 395 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 RP9Q8TA86 221 aaKnown RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 IGFBPL1Q8WX77 278 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 CRYGNQ8WXF5 182 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 MRPS27Q92552 414 aaKnown RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 TMEM79Q9BSE2 394 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 TMEM117Q9H0C3 514 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 S1PR5Q9H228 398 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 ATP6V0A4Q9HBG4 840 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 ZNF302Q9NR11 478 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 TBC1D22BQ9NU19 505 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 ASIC5Q9NY37 505 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 BARHL2Q9NY43 387 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 GINS2Q9Y248 185 aa4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 EP300Q09472 2414 aaPredicted RBP4.42□□□□□ -1.7
SNRNP40-205ENST00000486941 GVINP1Q7Z2Y8 2422 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 IGLV3-22A0A075B6J6 115 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 ESYT2A0FGR8 921 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 HIDE1A8MVS5 230 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 FAM86B1E9PN63 330 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 DDX39AO00148 427 aaKnown RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 IPO5O00410 1097 aaKnown RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 ZBTB43O43298 467 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 CLSTN1O94985 981 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 C22orf31O95567 290 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 FAM86B2P0C5J1 330 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 ATXN1LP0C7T5 689 aaKnown RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 IBSPP21815 317 aaPredicted RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 ATP5F1P24539 256 aaPredicted RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 TMOD1P28289 359 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 HOXD9P28356 352 aaPredicted RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 PPM1AP35813 382 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 TECP42680 631 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 MMP13P45452 471 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 RCAN1P53805 252 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 SOX8P57073 446 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 NLRP11P59045 1033 aaKnown RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 IQCB1Q15051 598 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 PFKFB3Q16875 520 aaPredicted RBP4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 PLPP4Q5VZY2 271 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 CES5AQ6NT32 575 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 APOA5Q6Q788 366 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 FAM228AQ86W67 206 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 PLA2G4DQ86XP0 818 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 RAB11FIP4Q86YS3 637 aa4.41□□□□□ -1.7
SNRNP40-205ENST00000486941 CNGA4Q8IV77 575 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms