RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HOMER3Q9NSC5 361 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 FZD4Q9ULV1 537 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 H3BRJ5 948 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 ALOX15BO15296 676 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 SIN3BO75182 1162 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 ADH1BP00325 375 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 BBS12Q6ZW61 710 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 DSG4Q86SJ6 1040 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 APCDD1Q8J025 514 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 HDDC3Q8N4P3 179 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 MMGT1Q8N4V1 131 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 DEFB119Q8N690 84 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 ZNF366Q8N895 744 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 TTC13Q8NBP0 860 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 ERLEC1Q96DZ1 483 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 ALG14Q96F25 216 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 RUNDC3BQ96NL0 473 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 RNF157Q96PX1 679 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 C2orf49Q9BVC5 232 aaPredicted RBP17.36■□□□□ 0.37
VIM-205ENST00000485947 MAK16Q9BXY0 300 aaKnown RBP17.36■□□□□ 0.37
VIM-205ENST00000485947 FRMD8P1Q9BZ68 369 aaPredicted RBP17.36■□□□□ 0.37
VIM-205ENST00000485947 SIK2Q9H0K1 926 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 SLC32A1Q9H598 525 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 DNAAF2Q9NVR5 837 aaKnown RBP17.36■□□□□ 0.37
VIM-205ENST00000485947 SLC25A13Q9UJS0 675 aa17.36■□□□□ 0.37
VIM-205ENST00000485947 PI4KAP42356 2102 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 ZFYVE26Q68DK2 2539 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 BCAT2O15382 392 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 ATP9BO43861 1147 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 OPHN1O60890 802 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 SEMA4FO95754 770 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 CD48P09326 243 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 ZFXP17010 805 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 C5AR1P21730 350 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 HCAR3P49019 387 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 TERF1P54274 439 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 NRG1Q02297 640 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 C2orf54Q08AI8 447 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 SEMA3BQ13214 749 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 SIX1Q15475 284 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 CST6Q15828 149 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 CYP1B1Q16678 543 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 PPP6R3Q5H9R7 873 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 C6orf118Q5T5N4 469 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 RFX6Q8HWS3 928 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 ZNF683Q8IZ20 524 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 PTPRN2Q92932 1015 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 EPAS1Q99814 870 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 HEMGNQ9BXL5 484 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 PPARGC1AQ9UBK2 798 aaKnown RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 SLCO3A1Q9UIG8 710 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 VPS28Q9UK41 221 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 HS3ST2Q9Y278 367 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 OR51B4Q9Y5P0 310 aa17.35■□□□□ 0.37
VIM-205ENST00000485947 ATXN2Q99700 1313 aaKnown RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 ANKRD11Q6UB99 2663 aaPredicted RBP17.35■□□□□ 0.37
VIM-205ENST00000485947 FRYQ5TBA9 3013 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 ASPMQ8IZT6 3477 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 TTC34A8MYJ7 566 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 PHF2O75151 1096 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 ZNF883P0CG24 379 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 KRT10P13645 584 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 IL4RP24394 825 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 MZF1P28698 734 aaPredicted RBP17.34■□□□□ 0.37
VIM-205ENST00000485947 CHRNA3P32297 505 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 ACSL1P33121 698 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 CLCN6P51797 869 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 ANKRD20A8PQ5CZ79 823 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 FAM46CQ5VWP2 391 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 KAZNQ674X7 775 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 SLC9A4Q6AI14 798 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 C14orf80Q86SX3 495 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 C1orf216Q8TAB5 229 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 FRS2Q8WU20 508 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 CSPG4P5Q96PW8 444 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 FAM129BQ96TA1 746 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 HERPUD2Q9BSE4 406 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 AP1M1Q9BXS5 423 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 KDM4CQ9H3R0 1056 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 ANLNQ9NQW6 1124 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 FBXL12Q9NXK8 326 aa17.34■□□□□ 0.37
VIM-205ENST00000485947 CACNA1EQ15878 2313 aa17.33■□□□□ 0.37
VIM-205ENST00000485947 CEP192Q8TEP8 1941 aa17.33■□□□□ 0.37
VIM-205ENST00000485947 TCRBV7S2A1N4TA0A589 114 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 ILVBLA1L0T0 632 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 LRRC72A6NJI9 287 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 I6L893 689 aaPredicted RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 APOC4-APOC2K7ER74 178 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 EEF2KO00418 725 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 APOL1O14791 398 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 SLC7A4O43246 635 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 CST8O60676 142 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 APOC2P02655 101 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 GOT1P17174 413 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 TGM2P21980 687 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 CD27P26842 260 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 SLC8A1P32418 973 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 ETFBP38117 255 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms