RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 KPNA3O00505 521 aaPredicted RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 LATO43561 262 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 PALMO75781 387 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ZFXP17010 805 aaPredicted RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ITPKAP23677 461 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 CTNNA2P26232 953 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 GARSP41250 739 aaKnown RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 CDKN2BP42772 138 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 MAPK8P45983 427 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 CCZ1BP86790 482 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 CCZ1P86791 482 aaPredicted RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 LMNB2Q03252 620 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 RAD51Q06609 339 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 NSUN2Q08J23 767 aaKnown RBP eCLIP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ZFYVE27Q5T4F4 411 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ATXN7L2Q5T6C5 722 aaPredicted RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 DCAF12L1Q5VU92 463 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 KIAA0895LQ68EN5 471 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 NEK5Q6P3R8 708 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 PRR23CQ6ZRP0 262 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ERN2Q76MJ5 926 aaKnown RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ARMCX6Q7L4S7 300 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 DAAM2Q86T65 1068 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 PLD5Q8N7P1 536 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 EXD1Q8NHP7 514 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 C1orf216Q8TAB5 229 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 CEP76Q8TAP6 659 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 HCAR2Q8TDS4 363 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 GANCQ8TET4 914 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 UBE2Q2Q8WVN8 375 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 MAML1Q92585 1016 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 HDAC11Q96DB2 347 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 TUBGCP5Q96RT8 1024 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 ORAI3Q9BRQ5 295 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 TSGA10Q9BZW7 698 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 DYRK4Q9NR20 520 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 DTLQ9NZJ0 730 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 DKK3Q9UBP4 350 aa16.12■□□□□ 0.17
UPF3A-208ENST00000484246 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 NYNRINQ9P2P1 1898 aaKnown RBP16.12■□□□□ 0.17
UPF3A-208ENST00000484246 TSPAN11A1L157 253 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 MEI4A8MW99 385 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RNF103O00237 685 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 AP1G1O43747 822 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 IGHV4-34P06331 123 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 NUDT1P36639 197 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 DNA2P51530 1060 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RENBPP51606 427 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 NEK3P51956 506 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 TAS2R38P59533 333 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 GBE1Q04446 702 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 HNRNPDQ14103 355 aaKnown RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 LBRQ14739 615 aaKnown RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 PPP2R5EQ16537 467 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 ZNF805Q5CZA5 627 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RALGPS1Q5JS13 557 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 TIGD7Q6NT04 549 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 SLC23A3Q6PIS1 610 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 NCEH1Q6PIU2 408 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 MFSD7Q6UXD7 560 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 ZSCAN30Q86W11 494 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 TRIM69Q86WT6 500 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RNF10Q8N5U6 811 aaKnown RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 TEX26Q8N6G2 289 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 NETO2Q8NC67 525 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 PIGKQ92643 395 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RAB7BQ96AH8 199 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 BIRC7Q96CA5 298 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RBM41Q96IZ5 413 aaKnown RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 OLFM3Q96PB7 478 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 MGME1Q9BQP7 344 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 CINPQ9BW66 212 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-208ENST00000484246 ZDHHC6Q9H6R6 413 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 TMEM74BQ9NUR3 256 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 AMACRQ9UHK6 382 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 PCDHA3Q9Y5H8 950 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 FAM186AA6NE01 2351 aa16.11■□□□□ 0.17
UPF3A-208ENST00000484246 RIF1Q5UIP0 2472 aaKnown RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 CCDC66A2RUB6 948 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 KRIT1O00522 736 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 APOL1O14791 398 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 NRDCO43847 1150 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 ZRANB2O95218 330 aaKnown RBP eCLIP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 CR2P20023 1033 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 CCNCP24863 283 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 CD27P26842 260 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 PTPN7P35236 360 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 RGRP47804 291 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 MARCKSL1P49006 195 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 COPS2P61201 443 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 AP1S1P61966 158 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 SLC10A7Q0GE19 358 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 TFDP2Q14188 446 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 DUOXA1Q1HG43 343 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 ALG1LQ6GMV1 187 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 GDPD4Q6W3E5 623 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 SPOCD1Q6ZMY3 1216 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 PARS2Q7L3T8 475 aaKnown RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 RCOR2Q8IZ40 523 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms