RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 UGT1A5P35504 534 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 CXCL9Q07325 125 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 MYBPC3Q14896 1274 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 NEPROQ6NW34 567 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 XRRA1Q6P2D8 792 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TMEM26Q6ZUK4 368 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SFRP1Q8N474 314 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ATG16L2Q8NAA4 619 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 OR7A2PQ8NGA2 310 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 CANT1Q8WVQ1 401 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SDCBP2Q9H190 292 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SOX17Q9H6I2 414 aaPredicted RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 HMG20AQ9NP66 347 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ZC4H2Q9NQZ6 224 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 NSMCE4AQ9NXX6 385 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TEX264Q9Y6I9 313 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 RGPD5Q99666 1765 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 HGFP14210 728 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 BCAT1P54687 386 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 LRRC74AQ0VAA2 488 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 GK3PQ14409 553 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 GJC2Q5T442 439 aaPredicted RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 DRICH1Q6PGQ1 229 aaPredicted RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 ZPBP2Q6X784 338 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 RALGPS2Q86X27 583 aaPredicted RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 OR9I1Q8NGQ6 314 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 HASPINQ8TF76 798 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 COPS5Q92905 334 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 ANAPC2Q9UJX6 822 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 GLTPD2A6NH11 291 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 NADKO95544 446 aaPredicted RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 TSHRP16473 764 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 ERCC2P18074 760 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 POU1F1P28069 291 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 BACE1P56817 501 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 NRG1Q02297 640 aaPredicted RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 DDX39BQ13838 428 aaKnown RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 CCNIQ14094 377 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 PGS1Q32NB8 556 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 TMEM214Q6NUQ4 689 aaKnown RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 PMF1Q6P1K2 205 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 PSTKQ8IV42 348 aaKnown RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 ZNF560Q96MR9 790 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 PPP1R10Q96QC0 940 aaKnown RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 TRIM8Q9BZR9 551 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 SYNCRIPO60506 623 aaKnown RBP13.66□□□□□ -0.22
USP42-206ENST00000479544 LINC00032P0C843 101 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 CYP4B1P13584 511 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 TIGD2Q4W5G0 525 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 RAB6CQ53S08 254 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 ARHGAP36Q6ZRI8 547 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 MIB1Q86YT6 1006 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 FIZ1Q96SL8 496 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 RAB6CQ9H0N0 254 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 POPDC2Q9HBU9 364 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 HACL1Q9UJ83 578 aa13.66□□□□□ -0.22
USP42-206ENST00000479544 WNT10BO00744 389 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 DBTP11182 482 aaKnown RBP13.65□□□□□ -0.22
USP42-206ENST00000479544 ADORA2AP29274 412 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ACADSBP45954 432 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 NR2C2P49116 596 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 GMPSP49915 693 aaPredicted RBP13.65□□□□□ -0.22
USP42-206ENST00000479544 RABGGTBP53611 331 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 SLC18A1P54219 525 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 LINC00523Q86TU6 105 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 PGAM4Q8N0Y7 254 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CALML6Q8TD86 181 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 FAR2Q96K12 515 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CSPG4P5Q96PW8 444 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CDT1Q9H211 546 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 WDR70Q9NW82 654 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ACKR2O00590 384 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ARHGEF9O43307 516 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ASNA1O43681 348 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 MFSD11O43934 449 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 RFPL1O75677 317 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ANXA9O76027 345 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 RBP1P09455 135 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 INSRRP14616 1297 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 SLC18A2Q05940 514 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 POTEHQ6S545 545 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ITFG1Q8TB96 612 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 EIF2AQ9BY44 585 aaKnown RBP13.65□□□□□ -0.22
USP42-206ENST00000479544 MYH1P12882 1939 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 MYH4Q9Y623 1939 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ZNF37AP17032 561 aaPredicted RBP13.65□□□□□ -0.22
USP42-206ENST00000479544 ITGB6P18564 788 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CES1P23141 567 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 RPL10P27635 214 aaKnown RBP13.65□□□□□ -0.22
USP42-206ENST00000479544 GRIK1P39086 918 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CCNG1P51959 295 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 DEFA1P59665 94 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 DEFA3P59666 94 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 MPP1Q00013 466 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 KIAA0319LQ8IZA0 1049 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 TWNKQ96RR1 684 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CEP44Q9C0F1 390 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 ABCG8Q9H221 673 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 CYP3A43Q9HB55 503 aa13.65□□□□□ -0.22
USP42-206ENST00000479544 FANCEQ9HB96 536 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms