RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ACADMP11310 421 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 POLR2EP19388 210 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PRKCHP24723 683 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 EEF1GP26641 437 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TPP2P29144 1249 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 CD6P30203 668 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 HLA-FP30511 346 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 GSTT1P30711 240 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 KRT9P35527 623 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 BPIFB4P59827 614 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF33AQ06730 810 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 RAPGEF1Q13905 1077 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 KCNJ12Q14500 433 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 DUOXA1Q1HG43 343 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF385BQ569K4 471 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 HSP90AA4PQ58FG1 418 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 EFHC1Q5JVL4 640 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 DAB2IPQ5VWQ8 1189 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 SYPL2Q5VXT5 272 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TMEM215Q68D42 235 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 NADSYN1Q6IA69 706 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 KIAA0907Q7Z7F0 614 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ADIPOR2Q86V24 386 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PASD1Q8IV76 773 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 MFN1Q8IWA4 741 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 CCDC117Q8IWD4 279 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 DEFB119Q8N690 84 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PRCCQ92733 491 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC39A13Q96H72 371 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PPP1R13BQ96KQ4 1090 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 BTN2A3PQ96KV6 586 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PRICKLE1Q96MT3 831 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 CPXM1Q96SM3 734 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 LSM14BQ9BX40 385 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 NUSAP1Q9BXS6 441 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TMEM245Q9H330 911 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 SIX2Q9NPC8 291 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TMEM9BQ9NQ34 198 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 LMBRD1Q9NUN5 540 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ASNSD1Q9NWL6 643 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 USP36Q9P275 1121 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 TJP2Q9UDY2 1190 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC12A6Q9UHW9 1150 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 AJAP1Q9UKB5 411 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PILRBQ9UKJ0 227 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 NUMA1Q14980 2115 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ATXN2Q99700 1313 aaKnown RBP7.02□□□□□ -1.28
CCDC88A-213ENST00000476903 TP53BP1Q12888 1972 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 PCNX2A6NKB5 2137 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 C4orf47A7E2U8 309 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 F5H5T6 163 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 GOLGA6L22H0YM25 854 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FOXN3O00409 490 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TRUB2O95900 331 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 IGLV3-19P01714 112 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 IGLV3-25P01717 112 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CFIP05156 583 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TPM2P07951 284 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ADRB1P08588 477 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 DLDP09622 509 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC2A3P11169 496 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ABCB4P21439 1286 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 OXTRP30559 389 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CD70P32970 193 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TPMTP51580 245 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ETF1P62495 437 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 RPS24P62847 133 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 IRX4P78413 519 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CDK17Q00537 523 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 MTA1Q13330 715 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CAMK2GQ13555 558 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CDH18Q13634 790 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 DRAP1Q14919 205 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 DCAF6Q58WW2 860 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TCP11X2Q5H9J9 407 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 MS4A13Q5J8X5 152 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SYCP2LQ5T4T6 812 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 KLHDC7AQ5VTJ3 777 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 MBLAC2Q68D91 279 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 OLFML1Q6UWY5 402 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 C11orf57Q6ZUT1 292 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM183BPQ6ZVS7 135 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC47A2Q86VL8 602 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TMPRSS6Q8IU80 811 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ZDHHC17Q8IUH5 632 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM71AQ8IYT1 594 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 LGI2Q8N0V4 545 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CARNMT1Q8N4J0 409 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 WDTC1Q8N5D0 677 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ATP6V0D2Q8N8Y2 350 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 C1orf131Q8NDD1 294 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 OR2T3Q8NH03 318 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FIBINQ8TAL6 211 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ENOX1Q8TC92 643 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 WFDC5Q8TCV5 224 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CYB5D2Q8WUJ1 264 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 RNF34Q969K3 372 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SIPA1Q96FS4 1042 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms