RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 WASF2Q9Y6W5 498 aa12.84□□□□□ -0.35
SKA3-206ENST00000475251 TRPM6Q9BX84 2022 aa12.84□□□□□ -0.35
SKA3-206ENST00000475251 COL27A1Q8IZC6 1860 aaPredicted RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 CXorf51AA0A1B0GTR3 108 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 A0A1W2PNU3 283 aaPredicted RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 ILVBLA1L0T0 632 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 GOLGA6L4A6NEF3 574 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 LMO7DNF2Z398 122 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 PYCARD-AS1I3L0S3 204 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 TOR1BO14657 336 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 PLD2O14939 933 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 RAD51BO15315 384 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SMAD6O43541 496 aaKnown RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 GRAP2O75791 330 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 CNTN5O94779 1100 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 F9P00740 461 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 GGCXP38435 758 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SERPINH1P50454 418 aaKnown RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 PFN3P60673 137 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 YPEL5P62699 121 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SLC6A3Q01959 620 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 FGL2Q14314 439 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 ALFQ53S48 1182 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 CARD16Q5EG05 197 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 PRRT3Q5FWE3 981 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SMYD5Q6GMV2 418 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 CRTC1Q6UUV9 634 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 OLFML1Q6UWY5 402 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 ATG14Q6ZNE5 492 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 USP53Q70EK8 1073 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SLC26A9Q7LBE3 791 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 C14orf80Q86SX3 495 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 FMR1NBQ8N0W7 255 aaPredicted RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 ZNF397Q8NF99 534 aaPredicted RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 SCG3Q8WXD2 468 aaKnown RBP12.83□□□□□ -0.36
SKA3-206ENST00000475251 SGF29Q96ES7 293 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 C1orf74Q96LT6 269 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 C1QTNF7Q9BXJ2 289 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 C1QTNF2Q9BXJ5 285 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 WDR70Q9NW82 654 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 SEPT10Q9P0V9 454 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 KLF15Q9UIH9 416 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 PADI4Q9UM07 663 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 PCDHGC3Q9UN70 934 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 DOLKQ9UPQ8 538 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 MAST4O15021 2626 aa12.83□□□□□ -0.36
SKA3-206ENST00000475251 A0A0D9SEW6 157 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 DRGXA6NNA5 263 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 CYSRT1A8MQ03 144 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 ENDOD1O94919 500 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 ETFBP38117 255 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 USP8P40818 1118 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 CXCR3P49682 368 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 BLKP51451 505 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 DNA2P51530 1060 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 CCNHP51946 323 aaPredicted RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 ADKP55263 362 aaKnown RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 GEMIN4P57678 1058 aaKnown RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 EIF2B5Q13144 721 aaKnown RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 PERM1Q5SV97 790 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 FAM183BPQ6ZVS7 135 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 TRIM59Q8IWR1 403 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 PLPP6Q8IY26 295 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 SLC35F3Q8IY50 421 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 PHACTR4Q8IZ21 702 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 FSTL5Q8N475 847 aaPredicted RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 FBXO39Q8N4B4 442 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 C1orf131Q8NDD1 294 aaKnown RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 KLF6Q99612 283 aaPredicted RBP12.82□□□□□ -0.36
SKA3-206ENST00000475251 SPON2Q9BUD6 331 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 ATP13A1Q9HD20 1204 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 PIGVQ9NUD9 493 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.82□□□□□ -0.36
SKA3-206ENST00000475251 ACSL6Q9UKU0 697 aa12.82□□□□□ -0.36
SKA3-206ENST00000475251 IGLV3-10A0A075B6K4 115 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 IGLON5A6NGN9 336 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 NTN3O00634 580 aaPredicted RBP12.81□□□□□ -0.36
SKA3-206ENST00000475251 SPINT1O43278 529 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 ZNF821O75541 412 aaPredicted RBP12.81□□□□□ -0.36
SKA3-206ENST00000475251 FGFR1OPO95684 399 aaKnown RBP12.81□□□□□ -0.36
SKA3-206ENST00000475251 ALPIP09923 528 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 SLC5A2P31639 672 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 SULT1E1P49888 294 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 PDX1P52945 283 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 MARSP56192 900 aaKnown RBP12.81□□□□□ -0.36
SKA3-206ENST00000475251 PTK2Q05397 1052 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 DEUP1Q05D60 604 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 ELOCQ15369 112 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 FAXCQ5TGI0 409 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 TTI2Q6NXR4 508 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 LVRNQ6Q4G3 990 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 MACC1Q6ZN28 852 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 PARS2Q7L3T8 475 aaKnown RBP12.81□□□□□ -0.36
SKA3-206ENST00000475251 RAB11FIP2Q7L804 512 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 TFAP2DQ7Z6R9 452 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 JAMLQ86YT9 394 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 ZNF683Q8IZ20 524 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 RBFAQ8N0V3 343 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 SDR16C5Q8N3Y7 309 aa12.81□□□□□ -0.36
SKA3-206ENST00000475251 ARL10Q8N8L6 244 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms