RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 NUDT1P36639 197 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 CCDC15Q0P6D6 951 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 HNRNPDQ14103 355 aaKnown RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 TRIP6Q15654 476 aaKnown RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 PARP15Q460N3 678 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 SETMARQ53H47 684 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 PPP6R3Q5H9R7 873 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 SKA1Q96BD8 255 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 ARHGEF26Q96DR7 871 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 BTBD6Q96KE9 485 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 EIF3CQ99613 913 aaKnown RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 MYOCQ99972 504 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 LRRC19Q9H756 370 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 DMTF1Q9Y222 760 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.23■□□□□ 0.513e-6■■■■■ 27.4
UPF3A-203ENST00000474056 A0A1B0GTQ1 180 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 KRIT1O00522 736 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 FLRT2O43155 660 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 PCDH8O95206 1070 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 PRLRP16471 622 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 ERCC2P18074 760 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 PCK1P35558 622 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 NXPH1P58417 271 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 NFKBIBQ15653 356 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 SMTNL2Q2TAL5 461 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 ZNF284Q2VY69 593 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 INO80DQ53TQ3 878 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-203ENST00000474056 SLC45A4Q5BKX6 768 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 SEL1L3Q68CR1 1132 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 NEK5Q6P3R8 708 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 ALKBH5Q6P6C2 394 aaKnown RBP18.22■□□□□ 0.51
UPF3A-203ENST00000474056 RFX8Q6ZV50 586 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 HORMAD1Q86X24 394 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 RNF214Q8ND24 703 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 BAHD1Q8TBE0 780 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-203ENST00000474056 CASKIN2Q8WXE0 1202 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 ELF4Q99607 663 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-203ENST00000474056 NUP85Q9BW27 656 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 SLC39A8Q9C0K1 460 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 PDFQ9HBH1 243 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 FZD3Q9NPG1 666 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 NENFQ9UMX5 172 aa18.22■□□□□ 0.51
UPF3A-203ENST00000474056 PLXNB3Q9ULL4 1909 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 COL5A1P20908 1838 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-203ENST00000474056 PRAMEF26H0Y7S4 382 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 J3KR12 359 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 TLR4O00206 839 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 SLC31A1O15431 190 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 CBFA2T2O43439 604 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 PCDHGA12O60330 932 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 UGT2B4P06133 528 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 ABL2P42684 1182 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 NDST2P52849 883 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 RHOAP61586 193 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 SUZ12Q15022 739 aaKnown RBP18.21■□□□□ 0.51
UPF3A-203ENST00000474056 ACAP1Q15027 740 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 MYLK3Q32MK0 819 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 CCDC122Q5T0U0 273 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 FBXL19Q6PCT2 694 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 SPATS2Q86XZ4 545 aaKnown RBP18.21■□□□□ 0.51
UPF3A-203ENST00000474056 PSTKQ8IV42 348 aaKnown RBP18.21■□□□□ 0.51
UPF3A-203ENST00000474056 ARHGAP12Q8IWW6 846 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 MFSD2AQ8NA29 543 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 TMEM145Q8NBT3 493 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 RHBDD1Q8TEB9 315 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 GDAP1L1Q96MZ0 367 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 GDF3Q9NR23 364 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 LHX3Q9UBR4 397 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 UBA2Q9UBT2 640 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-203ENST00000474056 ANAPC7Q9UJX3 599 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 FADS3Q9Y5Q0 445 aa18.21■□□□□ 0.51
UPF3A-203ENST00000474056 C16orf96A6NNT2 1141 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 DAPK3O43293 454 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 HYAL3O43820 417 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 POP4O95707 220 aaKnown RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 IGSF6O95976 241 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 CYP1A2P05177 515 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 FTH1P19P0C7X4 201 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 HNRNPH3P31942 346 aaKnown RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 EIF4A3P38919 411 aaKnown RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 PAPOLAP51003 745 aaKnown RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 STAT4Q14765 748 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 CYTH1Q15438 398 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 SHBQ15464 509 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 TMEM259Q4ZIN3 620 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 ZNF805Q5CZA5 627 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 GATAD2AQ86YP4 633 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 NPWQ8N729 165 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 LRIG1Q96JA1 1093 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 EXOC2Q96KP1 924 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 KLHL32Q96NJ5 620 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 NCAPGQ9BPX3 1015 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 SCNM1Q9BWG6 230 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 ZWILCHQ9H900 591 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 DONSONQ9NYP3 566 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 CWC15Q9P013 229 aaKnown RBP18.2■□□□□ 0.5
UPF3A-203ENST00000474056 GGT7Q9UJ14 662 aa18.2■□□□□ 0.5
UPF3A-203ENST00000474056 ARHGAP42A6NI28 874 aa18.19■□□□□ 0.5
UPF3A-203ENST00000474056 INSIG1O15503 277 aa18.19■□□□□ 0.5
UPF3A-203ENST00000474056 AP1G1O43747 822 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms