RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CYP2W1Q8TAV3 490 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 ATG4AQ8WYN0 398 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 R3HDM4Q96D70 268 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 C5orf34Q96MH7 638 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 BRD8Q9H0E9 1235 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 DNAJC18Q9H819 358 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 ZMAT3Q9HA38 289 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 GLOD4Q9HC38 313 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 ERVK-5Q9HDB9 667 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 MID1IP1Q9NPA3 183 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 EIF2B3Q9NR50 452 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 PDGFCQ9NRA1 345 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 SNTG1Q9NSN8 517 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 ELOVL5Q9NYP7 299 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 CHMP5Q9NZZ3 219 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 MORF4L1Q9UBU8 362 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 STK39Q9UEW8 545 aa5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-210ENST00000468534 A0A1W2PPC4 97 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 H0YAE9 185 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CETN3O15182 167 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC16A6O15403 523 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 MAGEB3O15480 346 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 FAM155BO75949 473 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CAMTA2O94983 1202 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 OLFM2O95897 454 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 ASGR1P07306 291 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CSF1P09603 554 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 NPSP0C0P6 89 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TYRP14679 529 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CAPN2P17655 700 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SFPQP23246 707 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TBXAS1P24557 533 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 EEF1GP26641 437 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 GDI1P31150 447 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 S100A5P33763 92 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 IDUAP35475 653 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CCT4P50991 539 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 LOXL3P58215 753 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 UBE3AQ05086 875 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 RUNX1T1Q06455 604 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 STK4Q13043 487 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 DAG1Q14118 895 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 NFE2L1Q14494 772 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 DUSP28Q4G0W2 176 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 KCNT1Q5JUK3 1230 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 ATPAF1Q5TC12 328 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 MAP3K21Q5TCX8 1036 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 RGS7BPQ6MZT1 257 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TMEM154Q6P9G4 183 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 DGLUCYQ7Z3D6 616 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SPATA24Q86W54 205 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC7A5P1Q8MH63 180 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 DPP10Q8N608 796 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC4A11Q8NBS3 891 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 BBOF1Q8ND07 529 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 DEPDC1BQ8WUY9 529 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TEKT4Q8WW24 435 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 XAGE5Q8WWM1 108 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC5A11Q8WWX8 675 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 GLG1Q92896 1179 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 MUL1Q969V5 352 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 LRRC45Q96CN5 670 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 FAM120BQ96EK7 910 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CGRRF1Q99675 332 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TBCDQ9BTW9 1192 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 CCDC106Q9BWC9 280 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 ITPAQ9BY32 194 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 FUT8Q9BYC5 575 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 GCOM2Q9BZD3 368 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 NACAP1Q9BZK3 213 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 KRT23Q9C075 422 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 VEZTQ9HBM0 779 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 PNPLA8Q9NP80 782 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SEPT11Q9NVA2 429 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 C5AR2Q9P296 337 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 FETUBQ9UGM5 382 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 IL19Q9UHD0 177 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 TEKT2Q9UIF3 430 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC39A10Q9ULF5 831 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 ADAMTS5Q9UNA0 930 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SSX2IPQ9Y2D8 614 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC4A4Q9Y6R1 1079 aa5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 FNDC1Q4ZHG4 1894 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-210ENST00000468534 SMIM35A0A1B0GVV1 85 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 LRRIQ4A6NIV6 560 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 C16orf96A6NNT2 1141 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 A8MXE2 369 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 H3BUI4 141 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TAF4O00268 1085 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PPEF2O14830 753 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 SPOPO43791 374 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PEX11AO75192 247 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 UNC5CO95185 931 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 IL18RAPO95256 599 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PDE8BO95263 885 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ONECUT2O95948 504 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TOP3BO95985 862 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PLGP00747 810 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TPM1P09493 284 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms