RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 BRCC3P46736 316 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ST13P50502 369 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 TPSAB1Q15661 275 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 SNX30Q5VWJ9 437 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 EPS8L3Q8TE67 593 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 NPY6RQ99463 290 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CCDC90BQ9GZT6 254 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 MLXIPLQ9NP71 852 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 SLC30A1Q9Y6M5 507 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 C1QTNF3-AMACRE9PGA6 284 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 RAMP2O60895 175 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 SKAP2O75563 359 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 SHBGP04278 402 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 C8AP07357 584 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 IL1RL1Q01638 556 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZNF555Q8NEP9 628 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 PPHLN1Q8NEY8 458 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 PABPC5Q96DU9 382 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 PGAP3Q96FM1 320 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 MAGED4Q96JG8 741 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 NAT9Q9BTE0 207 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 RAB6BQ9NRW1 208 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 SH3GLB1Q9Y371 365 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ARIH1Q9Y4X5 557 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 C5orf60A6NFR6 353 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 IGSF6O95976 241 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 VCLP18206 1134 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 RPS6KA3P51812 740 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 LONRF1Q17RB8 773 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 AARS2Q5JTZ9 985 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 ERAP2Q6P179 960 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ANKRD33Q7Z3H0 272 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CARNMT1Q8N4J0 409 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 MPP4Q96JB8 637 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 C9orf72Q96LT7 481 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CSPG4P5Q96PW8 444 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CIPCQ9C0C6 399 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZFP14Q9HCL3 533 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 DNAJC17Q9NVM6 304 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 GPATCH2LQ9NWQ4 482 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 GRIN2DO15399 1336 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 DYTNA2CJ06 578 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 TRDMT1O14717 391 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 KIAA0355O15063 1070 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 TPD52L2O43399 206 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 FGF18O76093 207 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 APODP05090 189 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CD48P09326 243 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 PFKLP17858 780 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ATP6V1C1P21283 382 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 GSTT1P30711 240 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 BMPR1AP36894 532 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 SKIV2L2P42285 1042 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 EIF2B2P49770 351 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 ABCE1P61221 599 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 SCAPQ12770 1279 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 TRIM32Q13049 653 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 NAT8LQ8N9F0 302 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 EZH1Q92800 747 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 PCED1BQ96HM7 432 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 KCTD15Q96SI1 283 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 ZIC5Q96T25 663 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZNF184Q99676 751 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 ADGRE3Q9BY15 652 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 AGO3Q9H9G7 860 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 PLGRKTQ9HBL7 147 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 SSU72Q9NP77 194 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 NPHS2Q9NP85 383 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 OCM2P0CE71 109 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 OCMP0CE72 109 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 DDX5P17844 614 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 KDSRQ06136 332 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 NAB1Q13506 487 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 TRIM71Q2Q1W2 868 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 MPPE1Q53F39 396 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZC3H12AQ5D1E8 599 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 GPR158Q5T848 1215 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 FAM171BQ6P995 826 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 TTC33Q6PID6 262 aaPredicted RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 NLRP9Q7RTR0 991 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZNF554Q86TJ5 538 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 PCDH19Q8TAB3 1148 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 RIN3Q8TB24 985 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 WFIKKN2Q8TEU8 576 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 OVCA2Q8WZ82 227 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CPT1BQ92523 772 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 EPB41L4BQ9H329 900 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 ZDHHC4Q9NPG8 344 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 CRTAC1Q9NQ79 661 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 EIF2B3Q9NR50 452 aaKnown RBP7.76□□□□□ -1.17
USP54-210ENST00000466048 TRHDEQ9UKU6 1024 aa7.76□□□□□ -1.17
USP54-210ENST00000466048 WDR47O94967 919 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 MLNP12872 115 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 TKTP29401 623 aaKnown RBP7.75□□□□□ -1.17
USP54-210ENST00000466048 MAGEA11P43364 429 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 SLC18A1P54219 525 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 RUNX1T1Q06455 604 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 MMRN1Q13201 1228 aa7.75□□□□□ -1.17
USP54-210ENST00000466048 LBRQ14739 615 aaKnown RBP7.75□□□□□ -1.17
USP54-210ENST00000466048 CCDC85BQ15834 202 aaPredicted RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms