RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 BTBD3Q9Y2F9 522 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 PIPSLA2A3N6 862 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 PSMD5Q16401 504 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 PAN2Q504Q3 1202 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 DGKKQ5KSL6 1271 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 ADAM32Q8TC27 787 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 GRHL1Q9NZI5 618 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 TRPM5Q9NZQ8 1165 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 PABPC1P11940 636 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ADSLP30566 484 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 HOXA10P31260 410 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 RNF220Q5VTB9 566 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 TLK2Q86UE8 772 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 NUAK2Q9H093 628 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 PNPOQ9NVS9 261 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 R3HDM2Q9Y2K5 976 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 LYPLA1O75608 230 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 LY6KQ17RY6 165 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF284Q2VY69 593 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 PERM1Q5SV97 790 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 FGD2Q7Z6J4 655 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 PTGR2Q8N8N7 351 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 UBASH3BQ8TF42 649 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 NAT14Q8WUY8 206 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 REPS1Q96D71 796 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 POLR1EQ9GZS1 481 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 SERHL2Q9H4I8 314 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 SERHLQ9NQF3 203 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 UBA2Q9UBT2 640 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 MYO5BQ9ULV0 1848 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 EME2A4GXA9 379 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 TK2O00142 265 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 IDO1P14902 403 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 GRIK3Q13003 919 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ZIK1Q3SY52 487 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 GLT6D1Q7Z4J2 308 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 TEKT5Q96M29 485 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 YME1L1Q96TA2 773 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ST6GALNAC4Q9H4F1 302 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 OPTCQ9UBM4 332 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 TSPAN3O60637 253 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 MAFO75444 373 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 SEC24AO95486 1093 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 SNHG28P0DPA3 235 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ASTE1Q2TB18 679 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF280DQ6N043 979 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 MON1BQ7L1V2 547 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 FLCNQ8NFG4 579 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 KCTD4Q8WVF5 259 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 MYDGFQ969H8 173 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ACO2Q99798 780 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 TBCDQ9BTW9 1192 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 LNPEPQ9UIQ6 1025 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF112Q9UJU3 913 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 VPS28Q9UK41 221 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 STXBP5LQ9Y2K9 1186 aa19.19■□□□□ 0.66
CCDC88B-204ENST00000463837 EPN2O95208 641 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 EPHA3P29320 983 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 DACT2Q5SW24 774 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 NBPF12Q5TAG4 269 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 TXNDC11Q6PKC3 985 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 ZBTB46Q86UZ6 589 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PPP3R2Q96LZ3 170 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PANX3Q96QZ0 392 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 OSMRQ99650 979 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 HDHD2Q9H0R4 259 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 KANSL3Q9P2N6 904 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 MYL12BO14950 172 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 VCLP18206 1134 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 CDH3P22223 829 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 CTXN3Q4LDR2 81 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 OVOS1Q6IE37 1185 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 TBC1D21Q8IYX1 336 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 GIPC3Q8TF64 312 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 RNFT2Q96EX2 444 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 TPD52L3Q96J77 140 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 YIPF2Q9BWQ6 316 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 OR12D3Q9UGF7 316 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 SLC25A13Q9UJS0 675 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 TBC1D30Q9Y2I9 924 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 H0YC42 278 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 NPM3O75607 178 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 NFKB1P19838 968 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 RNASEH2BQ5TBB1 312 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 ANKRD52Q8NB46 1076 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 DNAJB4Q9UDY4 337 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 BCL9LQ86UU0 1499 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PCNAP12004 261 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 MYL12AP19105 171 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PSMA3P25788 255 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 COX10Q12887 443 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 LPIN1Q14693 890 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 FSCN1Q16658 493 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PFKFB4Q16877 469 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 TRIM71Q2Q1W2 868 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 EML3Q32P44 896 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 LPCAT4Q643R3 524 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF549Q6P9A3 640 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 CLYBLQ8N0X4 340 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 C18orf25Q96B23 403 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms