RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 EXOC2Q96KP1 924 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ZBTB18Q99592 522 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SIKE1Q9BRV8 207 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 TRIM15Q9C019 465 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 GLOD4Q9HC38 313 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 RNF112Q9ULX5 631 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 E7ESA3 106 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 NR5A2O00482 541 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SIN3BO75182 1162 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 TPBGLP0DKB5 382 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ANPEPP15144 967 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 GMPRP36959 345 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 MPP1Q00013 466 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF460Q14592 562 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 PTRHD1Q6GMV3 140 aaKnown RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ESRP1Q6NXG1 681 aaKnown RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 C17orf99Q6UX52 265 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 LDB1Q86U70 411 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ATAD1Q8NBU5 361 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 GCNAQ96QF7 691 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 MMADHCQ9H3L0 296 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ADAM28Q9UKQ2 775 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 FAF1Q9UNN5 650 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SORCS3Q9UPU3 1222 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 GIT1Q9Y2X7 761 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 BEST1O76090 585 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 HMOX2P30519 316 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 RAB10P61026 200 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 SLC18A2Q05940 514 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 RBM23Q86U06 439 aaKnown RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 DENND6AQ8IWF6 608 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 LGI2Q8N0V4 545 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF781Q8N8C0 355 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 JADE3Q92613 823 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 OLFM3Q96PB7 478 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 RBBP8Q99708 897 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 GATA5Q9BWX5 397 aaPredicted RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 RHOJQ9H4E5 214 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 SLC28A3Q9HAS3 691 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 ATP6V1C1P21283 382 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 HOXA11P31270 313 aaPredicted RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 ALDH7A1P49419 539 aaKnown RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 ACLYP53396 1101 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 LIMK2P53671 638 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 CDH13P55290 713 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 TUSC3Q13454 348 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 MOGSQ13724 837 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 PSMD5Q16401 504 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 DCLRE1AQ6PJP8 1040 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 MARK2Q7KZI7 788 aaKnown RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 HPS6Q86YV9 775 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 TP53INP2Q8IXH6 220 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 OR52K2Q8NGK3 314 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 SEMA3CQ99985 751 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 FAM124BQ9H5Z6 455 aaPredicted RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 PIF1Q9H611 641 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 TLR8Q9NR97 1041 aaKnown RBP11.77□□□□□ -0.52
NPHP4-204ENST00000460696 FBXW11Q9UKB1 542 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 WASF2Q9Y6W5 498 aa11.77□□□□□ -0.52
NPHP4-204ENST00000460696 UBR3Q6ZT12 1888 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 H0Y626 953 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 FGF10O15520 208 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 WARSP23381 471 aaKnown RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 CHRNA4P43681 627 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ZNF135P52742 658 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 OXCT1P55809 520 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 FASTKQ14296 549 aaKnown RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ARL13AQ5H913 290 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 RALGPS1Q5JS13 557 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 TEDDM1Q5T9Z0 273 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 NET1Q7Z628 596 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 FAM228AQ86W67 206 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 CATSPER1Q8NEC5 780 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 HDAC10Q969S8 669 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 NXNL1Q96CM4 212 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 RCN3Q96D15 328 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ANKRD27Q96NW4 1050 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ZCWPW1Q9H0M4 648 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 COPS7BQ9H9Q2 264 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 CNTN3Q9P232 1028 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 DNAJC25-GNG10A0A024R161 153 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 FAM159BA6NKW6 160 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 C2orf81A6NN90 581 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 DUSP11O75319 330 aaKnown RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 TFEBP19484 476 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ME2P23368 584 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 SLC5A3P53794 718 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 KRT72Q14CN4 511 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 TRIM60Q495X7 471 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 GALNTL6Q49A17 601 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 LIPMQ5VYY2 423 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 CCDC138Q96M89 665 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 GBA3Q9H227 469 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 MID1IP1Q9NPA3 183 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 CYLDQ9NQC7 956 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 UXTQ9UBK9 157 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 TRMT6Q9UJA5 497 aaKnown RBP11.77□□□□□ -0.53
NPHP4-204ENST00000460696 ANKRD6Q9Y2G4 727 aa11.77□□□□□ -0.53
NPHP4-204ENST00000460696 RAP2CQ9Y3L5 183 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms