RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PPIDQ08752 370 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 PEAR1Q5VY43 1037 aaPredicted RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 TXNRD3NBQ6F5E7 133 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 LINGO4Q6UY18 593 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 NT5DC3Q86UY8 548 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 TRIM69Q86WT6 500 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 SYT12Q8IV01 421 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 CDKL3Q8IVW4 592 aaPredicted RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 RAPGEF5Q92565 580 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 NUDCD1Q96RS6 583 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 SRPK1Q96SB4 655 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 DESI2Q9BSY9 194 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 LACRTQ9GZZ8 138 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 NDFIP2Q9NV92 336 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 LHX3Q9UBR4 397 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 METTL12A8MUP2 240 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 RNASEH2AO75792 299 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 IL4RP24394 825 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 IFI35P80217 286 aaPredicted RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 ARHGAP8P85298 464 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 GDPD4Q6W3E5 623 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 TOE1Q96GM8 510 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 PPP2R2CQ9Y2T4 447 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 FCF1Q9Y324 198 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 hCG_1818297A0A087WSY0 165 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 BCLAF3A2AJT9 711 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 KPNA3O00505 521 aaPredicted RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 MID1O15344 667 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 TSPAN6O43657 245 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 MFSD11O43934 449 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 LMNB2Q03252 620 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 DPY19L3Q6ZPD9 716 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 TEX26Q8N6G2 289 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 PQLC3Q8N755 202 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 SPOCK2Q92563 424 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 P3H4Q92791 437 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 POLR1EQ9GZS1 481 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 TOR1BO14657 336 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 GFRA3O60609 400 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 RPL26P61254 145 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 CYTH1Q15438 398 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 DUOXA1Q1HG43 343 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 SETMARQ53H47 684 aaPredicted RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 MFSD7Q6UXD7 560 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 RAVER1Q8IY67 606 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 NPWQ8N729 165 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 RNF25Q96BH1 459 aaPredicted RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 ZDHHC6Q9H6R6 413 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 GUCA1BQ9UMX6 200 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 RPL26L1Q9UNX3 145 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 CACNA1IQ9P0X4 2223 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 C3orf70A6NLC5 250 aaPredicted RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 APOC4-APOC2K7ER74 178 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 PLRG1O43660 514 aaKnown RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 APOC2P02655 101 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 PXNP49023 591 aaPredicted RBP10.85□□□□□ -0.67
UBR4-208ENST00000459947 BCL2L1Q07817 233 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 RPS6KA1Q15418 735 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 CSRP2Q16527 193 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 ERAP2Q6P179 960 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 FBXL19Q6PCT2 694 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 PAF1Q8N7H5 531 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 ZNF366Q8N895 744 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 MGME1Q9BQP7 344 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 MAGEB5Q9BZ81 275 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 SCUBE2Q9NQ36 999 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 FAM86C1Q9NVL1 165 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 WASF2Q9Y6W5 498 aa10.85□□□□□ -0.67
UBR4-208ENST00000459947 A0A1B0GTW7 788 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 RCCD1A6NED2 376 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 MAFKO60675 156 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 MT-CO1P00395 513 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 SYPP08247 313 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 TNNT1P13805 278 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 GLDCP23378 1020 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 MMRN1Q13201 1228 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 DNASE2BQ8WZ79 361 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 OSBPL8Q9BZF1 889 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 KRIT1O00522 736 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 SMAD6O43541 496 aaKnown RBP10.84□□□□□ -0.67
UBR4-208ENST00000459947 CD160O95971 181 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 CD27P26842 260 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 TNNT3P45378 269 aaPredicted RBP10.84□□□□□ -0.67
UBR4-208ENST00000459947 OVGP1Q12889 678 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 ATP13A4Q4VNC1 1196 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 DAB2IPQ5VWQ8 1189 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 ALG1LQ6GMV1 187 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 IL27RAQ6UWB1 636 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 FEM1CQ96JP0 617 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 HINFPQ9BQA5 517 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 GPR174Q9BXC1 333 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 TNKS2Q9H2K2 1166 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 MBD1Q9UIS9 605 aaPredicted RBP10.84□□□□□ -0.67
UBR4-208ENST00000459947 TRHDEQ9UKU6 1024 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 BNIP3LO60238 219 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 DFNA5O60443 496 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 CST8O60676 142 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 CYP2A6P11509 494 aaPredicted RBP10.84□□□□□ -0.67
UBR4-208ENST00000459947 ARSIQ5FYB1 569 aa10.84□□□□□ -0.67
UBR4-208ENST00000459947 ITPRIPL1Q6GPH6 555 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms