RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 ATPAF2Q8N5M1 289 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CELF5Q8N6W0 485 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 NPWQ8N729 165 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 KCNV2Q8TDN2 545 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ALKBH8Q96BT7 664 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 YIPF3Q9GZM5 350 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 MLXIPLQ9NP71 852 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ETAA1Q9NY74 926 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 GDE1Q9NZC3 331 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 TBC1D14Q9P2M4 693 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CCL26Q9Y258 94 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 DPPA5A6NC42 116 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ARHGAP42A6NI28 874 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 SLC9A3R1O14745 358 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 NVLO15381 856 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 KCNN4O15554 427 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 MTSS1O43312 755 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 GREM1O60565 184 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 TSPAN3O60637 253 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CCDC22O60826 627 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 DNAJC6O75061 913 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 PRAMEF12O95522 483 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CYBBP04839 570 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 TARSP26639 723 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 OR1E1P30953 314 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 MTHFRP42898 656 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 PTDSS1P48651 473 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 PAPOLAP51003 745 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 USP4Q13107 963 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ZNF177Q13360 481 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 CBX2Q14781 532 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 MORF4L2Q15014 288 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 GSTA3Q16772 222 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 HHATQ5VTY9 493 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CCDC117Q8IWD4 279 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 BBS7Q8IWZ6 715 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 NPAS3Q8IXF0 933 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CFAP52Q8N1V2 620 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 FAM71DQ8N9W8 422 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 SPDYE1Q8NFV5 336 aaPredicted RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 FAM136AQ96C01 138 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 TMA16Q96EY4 203 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 CELF6Q96J87 481 aaKnown RBP16.12■□□□□ 0.17
SNX17-204ENST00000453453 ZSWIM3Q96MP5 696 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 RBM15Q96T37 977 aaKnown RBP eCLIP16.12■□□□□ 0.17
SNX17-204ENST00000453453 FAM167BQ9BTA0 163 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 FAM192AQ9GZU8 254 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 PCDH9Q9HC56 1237 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 CLEC1BQ9P126 229 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 ZFP69BQ9UJL9 534 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 HAO1Q9UJM8 370 aa16.12■□□□□ 0.17
SNX17-204ENST00000453453 SHROOM3Q8TF72 1996 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 NUP205Q92621 2012 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 TRDMT1O14717 391 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 SCAMP3O14828 347 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 TYROBPO43914 113 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 RAMP2O60895 175 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 TBX10O75333 385 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 RBL1P28749 1068 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 GARSP41250 739 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 YBEYP58557 167 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 ZNF33AQ06730 810 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 DNAJC3Q13217 504 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 PRKD1Q15139 912 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 ZNF77Q15935 545 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 KCTD19Q17RG1 926 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 CTC1Q2NKJ3 1217 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 MUM1Q2TAK8 710 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 PARP15Q460N3 678 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 MPPE1Q53F39 396 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 ARTNQ5T4W7 220 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 FAM47EQ6ZV65 393 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 CIR1Q86X95 450 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 CCDC33Q8N5R6 958 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 KIAA1958Q8N8K9 716 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 TDRD5Q8NAT2 981 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 HDAC11Q96DB2 347 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 OTUB2Q96DC9 234 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 PABPC5Q96DU9 382 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 PRICKLE1Q96MT3 831 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 PSMC3IPQ9P2W1 217 aaPredicted RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 SHOC2Q9UQ13 582 aa16.11■□□□□ 0.17
SNX17-204ENST00000453453 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.11■□□□□ 0.17
SNX17-204ENST00000453453 TM9SF1O15321 606 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 TBL1XO60907 577 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 GCAP28676 217 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 RPS24P62847 133 aaKnown RBP16.1■□□□□ 0.17
SNX17-204ENST00000453453 PPIDQ08752 370 aaKnown RBP16.1■□□□□ 0.17
SNX17-204ENST00000453453 ADGRE1Q14246 886 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 KRT72Q14CN4 511 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 POLD3Q15054 466 aaPredicted RBP16.1■□□□□ 0.17
SNX17-204ENST00000453453 TRIP13Q15645 432 aaPredicted RBP16.1■□□□□ 0.17
SNX17-204ENST00000453453 PDCD2Q16342 344 aaPredicted RBP16.1■□□□□ 0.17
SNX17-204ENST00000453453 AFMIDQ63HM1 303 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 C4orf22Q6V702 233 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 NLRP9Q7RTR0 991 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 ZNF354CQ86Y25 554 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 ARHGAP24Q8N264 748 aa16.1■□□□□ 0.17
SNX17-204ENST00000453453 DDI1Q8WTU0 396 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms