RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SLC14A1Q13336 389 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 DPYSQ14117 519 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 CYTH1Q15438 398 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 DPYSL2Q16555 572 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 TRIM69Q86WT6 500 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF564Q8TBZ8 553 aaPredicted RBP12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 CASKIN2Q8WXE0 1202 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 PPP1R16AQ96I34 528 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 LRIG1Q96JA1 1093 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 SERAC1Q96JX3 654 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 RBSNQ9H1K0 784 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 DEF6Q9H4E7 631 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 NHEJ1Q9H9Q4 299 aaPredicted RBP12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 PDFQ9HBH1 243 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 PREBQ9HCU5 417 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 AASDHPPTQ9NRN7 309 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 CTTNBP2NLQ9P2B4 639 aa12.95□□□□□ -0.34
PRPF40A-203ENST00000448428 KNL1Q8NG31 2342 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 A0A1W2PR77 199 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 ARHGAP42A6NI28 874 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 AKR1B15C9JRZ8 316 aaPredicted RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 H3BRJ5 948 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 VILLO15195 856 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 PRAMEF11O60813 436 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 CER1O95813 267 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 H2AFZP0C0S5 128 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 AMPD1P23109 780 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 CD38P28907 300 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 RHOAP61586 193 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC25A11Q02978 314 aaKnown RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 NEK5Q6P3R8 708 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 FBXL19Q6PCT2 694 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 H2AFVQ71UI9 128 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 POLNQ7Z5Q5 900 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 ADAT2Q7Z6V5 191 aaKnown RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 CPNE8Q86YQ8 564 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 ARHGAP12Q8IWW6 846 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 TP53INP2Q8IXH6 220 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 NPWQ8N729 165 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 TEKT4Q8WW24 435 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 CTNNBL1Q8WYA6 563 aaPredicted RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 KLK6Q92876 244 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC32A1Q9H598 525 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 TM7SF3Q9NS93 570 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 SPTLC3Q9NUV7 552 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 UVRAGQ9P2Y5 699 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 LHX3Q9UBR4 397 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 UBA2Q9UBT2 640 aaPredicted RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 FNDC3AQ9Y2H6 1198 aaKnown RBP12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 MFHAS1Q9Y4C4 1052 aa12.94□□□□□ -0.34
PRPF40A-203ENST00000448428 SHROOM3Q8TF72 1996 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 A0A1W2PQU0 124 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 C16orf96A6NNT2 1141 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 DFFAO00273 331 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 INSIG1O15503 277 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 SH3BP5O60239 455 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 PCDH8O95206 1070 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 UGT2B4P06133 528 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF883P0CG24 379 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ADRB3P13945 408 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 NUDT1P36639 197 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ARL4AP40617 200 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CTSKP43235 329 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 SSR1P43307 286 aaKnown RBP12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 NEK3P51956 506 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 C21orf59P57076 290 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF284Q2VY69 593 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ATP13A4Q4VNC1 1196 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 SETMARQ53H47 684 aaPredicted RBP12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF805Q5CZA5 627 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 NAPEPLDQ6IQ20 393 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ARHGAP36Q6ZRI8 547 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 PARS2Q7L3T8 475 aaKnown RBP12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 HORMAD1Q86X24 394 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CNGA4Q8IV77 575 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 TSC1Q92574 1164 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CCDC42Q96M95 316 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 GDAP1L1Q96MZ0 367 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 KLHL32Q96NJ5 620 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CAMK1GQ96NX5 476 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CSPG4P5Q96PW8 444 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 PCDH18Q9HCL0 1135 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ETNK2Q9NVF9 386 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ZFR2Q9UPR6 939 aaKnown RBP12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 DMTF1Q9Y222 760 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 FADS3Q9Y5Q0 445 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 ANKRD36A6QL64 1941 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CNOT1A5YKK6 2376 aaKnown RBP12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 CACNA1AO00555 2505 aa12.93□□□□□ -0.34
PRPF40A-203ENST00000448428 H0Y8X5 98 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 TLR4O00206 839 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC31A1O15431 190 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 PALMO75781 387 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 PROSCO94903 275 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 IGSF6O95976 241 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 TMEM253P0C7T8 217 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 PRLRP16471 622 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 IL4RP24394 825 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 ARSEP51690 589 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms