RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MTG1Q9BT17 334 aaPredicted RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 ADAM33Q9BZ11 813 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 AGPAT3Q9NRZ7 376 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SPEF1Q9Y4P9 236 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 H7C4K7 107 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 FTH1P02794 183 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ARFIP1P53367 373 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ATP12AP54707 1039 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SLC27A3Q5K4L6 730 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 PGAP1Q75T13 922 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 STRADAQ7RTN6 431 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SMYD1Q8NB12 490 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ELMO1Q92556 727 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ART4Q93070 314 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 DCPSQ96C86 337 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 HS6ST1O60243 411 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ZNF3P17036 446 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 TAF6P49848 677 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ILF3Q12906 894 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS53-204ENST00000437048 VMACQ2NL98 169 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 TMC8Q8IU68 726 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 AGPAT5Q9NUQ2 364 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 DISP1Q96F81 1524 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 KBTBD13C9JR72 458 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 DGKAP23743 735 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 UGT2B15P54855 530 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ZNF181Q2M3W8 571 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 RNF135Q8IUD6 432 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 MRI1Q9BV20 369 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ACAT2Q9BWD1 397 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 KIAA1683Q9H0B3 1180 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 MARCH7Q9H992 704 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SIX4Q9UIU6 781 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ANKRD26Q9UPS8 1709 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ZC3H4Q9UPT8 1303 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 SLC28A1O00337 649 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 PDHBP11177 359 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 COX4I1P13073 169 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 FGFR3P22607 806 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 MAPK3P27361 379 aaPredicted RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 RHAGQ02094 409 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 MAB21L1Q13394 359 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 FSCN1Q16658 493 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 CSGALNACT1Q8TDX6 532 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 UTP15Q8TED0 518 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 FKBP10Q96AY3 582 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 FAM86C1Q9NVL1 165 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 KCNIP3Q9Y2W7 256 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 OGTO15294 1046 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 TADA2AO75478 443 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 OTCP00480 354 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 HPGDP15428 266 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 BMP7P18075 431 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CYP11B2P19099 503 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CTBP2P56545 445 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 YWHAZP63104 245 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 RGS1Q08116 209 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 BNIP1Q12981 228 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 GRM3Q14832 879 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 OAFQ86UD1 273 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ITCHQ96J02 903 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 TMEM138Q9NPI0 162 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 DMGDHQ9UI17 866 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 CDC40O60508 579 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS53-204ENST00000437048 PLA2G6O60733 806 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 RLN2P04090 185 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ZNF806P0C7X5 589 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CYP24A1Q07973 514 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 PLD1Q13393 1074 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CRY1Q16526 586 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 MAPKAPK3Q16644 382 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ZNF185O15231 689 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ODC1P11926 461 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 AGTR1P30556 359 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 DENND5BQ6ZUT9 1274 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 FAM205AQ6ZU69 1335 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 GNAZP19086 355 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SLC9A3P48764 834 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 IL2P60568 153 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 NT5DC3Q86UY8 548 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 OR2T34Q8NGX1 318 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 OR2T3Q8NH03 318 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 ACTL9Q8TC94 416 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CAMK1GQ96NX5 476 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 HERC2P3Q9BVR0 1158 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 NUSAP1Q9BXS6 441 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 KAT8Q9H7Z6 458 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 PLCL2Q9UPR0 1127 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 GNEQ9Y223 722 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 LOXHD1Q8IVV2 1947 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 TRIM3O75382 744 aaPredicted RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 RTP1P59025 263 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 SPATA2LQ8IUW3 424 aaPredicted RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 FAM13CQ8NE31 585 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 CHST13Q8NET6 341 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 URADA6NGE7 173 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GPC1P35052 558 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 N4BP2L1Q5TBK1 243 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 FAM199XQ6PEV8 388 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 LAYNQ6UX15 382 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms