RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 CREB3L4Q8TEY5 395 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 TMEM170AQ8WVE7 144 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 MAP4K1Q92918 833 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 ZNF419Q96HQ0 510 aaPredicted RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 BBS4Q96RK4 519 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 MAP7D2Q96T17 732 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 MOV10Q9HCE1 1003 aaKnown RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 FBRSL1Q9HCM7 1045 aaKnown RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 PAPOLBQ9NRJ5 636 aaKnown RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 RNF146Q9NTX7 359 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 NCKIPSDQ9NZQ3 722 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 DLGAP2Q9P1A6 1054 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 NLKQ9UBE8 527 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 ZNHIT2Q9UHR6 403 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 NRBP1Q9UHY1 535 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 CARD8Q9Y2G2 431 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 FAM96BQ9Y3D0 163 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 SLC4A4Q9Y6R1 1079 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 hCG_1807616A0A1W2PRN6 198 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 TARSL2A2RTX5 802 aaKnown RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 C17orf100A8MU93 164 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 FAM157AC9JC47 383 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 UGDHO60701 494 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 HOXB5P09067 269 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 TNFRSF1AP19438 455 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 BMP5P22003 454 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 RFC1P35251 1148 aaPredicted RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 RGS2P41220 211 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 RPS13P62277 151 aaKnown RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 MST1RQ04912 1400 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 FRG1Q14331 258 aaKnown RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 MED22Q15528 200 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 ME3Q16798 604 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 KIAA1755Q5JYT7 1200 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 TICAM1Q8IUC6 712 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 C17orf53Q8N3J3 647 aaPredicted RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 TMEM116Q8NCL8 245 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 GTF3C6Q969F1 213 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 ZC3HAV1LQ96H79 300 aaKnown RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 CCDC34Q96HJ3 373 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 ZNF333Q96JL9 665 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 SIN3AQ96ST3 1273 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 HEMGNQ9BXL5 484 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 NKIRAS2Q9NYR9 191 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 HSPB7Q9UBY9 170 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 LAMP3Q9UQV4 416 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 AAR2Q9Y312 384 aaKnown RBP6.29□□□□□ -1.4
USP54-206ENST00000433394 RAP2CQ9Y3L5 183 aa6.29□□□□□ -1.4
USP54-206ENST00000433394 WDR17Q8IZU2 1322 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 A0A1W2PQM1 296 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 A0A1W2PRG0 241 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 MMP3P08254 477 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 CSH1P0DML2 217 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 CSH2P0DML3 217 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 CERS1P27544 350 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 TTKP33981 857 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 KRT20P35900 424 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 DPP6P42658 865 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 ACVR2BQ13705 512 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 EARS2Q5JPH6 523 aaKnown RBP6.28□□□□□ -1.4
USP54-206ENST00000433394 KLHL35Q6PF15 583 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 TSSK4Q6SA08 328 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 TBC1D26Q86UD7 250 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 LURAP1LQ8IV03 231 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 C8orf58Q8NAV2 365 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 SEMA6DQ8NFY4 1073 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 HASPINQ8TF76 798 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 ZFYVE19Q96K21 471 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 CMTM3Q96MX0 182 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 LBHD1Q9BQE6 289 aaPredicted RBP6.28□□□□□ -1.4
USP54-206ENST00000433394 CXorf56Q9H5V9 222 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 SNX8Q9Y5X2 465 aa6.28□□□□□ -1.4
USP54-206ENST00000433394 UTYO14607 1347 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 RUSC2Q8N2Y8 1516 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 C2CD4BA6NLJ0 364 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 LINC01548A6NM66 108 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 FOXO6A8MYZ6 492 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 SLC25A17O43808 307 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 HEXAP06865 529 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 KRT4P19013 534 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 DPTQ07507 201 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 EPS8Q12929 822 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 CSTF3Q12996 717 aaKnown RBP6.27□□□□□ -1.41
USP54-206ENST00000433394 AIMP2Q13155 320 aaKnown RBP6.27□□□□□ -1.41
USP54-206ENST00000433394 TTI2Q6NXR4 508 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 ZNF793Q6ZN11 406 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 Q6ZPA2 131 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 ENOSF1Q7L5Y1 443 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 UBE2Q1Q7Z7E8 422 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 ARHGAP12Q8IWW6 846 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 DDIASQ8IXT1 998 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 ZDHHC23Q8IYP9 409 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 KIAA2013Q8IYS2 634 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 RASSF8Q8NHQ8 419 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 ATOH1Q92858 354 aaPredicted RBP6.27□□□□□ -1.41
USP54-206ENST00000433394 MOAP1Q96BY2 351 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 RNF183Q96D59 192 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 SCNM1Q9BWG6 230 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 STRA6Q9BX79 667 aa6.27□□□□□ -1.41
USP54-206ENST00000433394 FRMD8Q9BZ67 464 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms