RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 SOWAHCQ53LP3 525 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 AKNAD1Q5T1N1 836 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 FBXO42Q6P3S6 717 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 LRIG3Q6UXM1 1119 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 MOB3CQ70IA8 216 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 IKBIPQ70UQ0 350 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 SZRD1Q7Z422 152 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 KDELC2Q7Z4H8 507 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 ARHGAP12Q8IWW6 846 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 OR8H2Q8N162 312 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 GHDCQ8N2G8 530 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 TTC39CQ8N584 583 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 WDTC1Q8N5D0 677 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 KDM1BQ8NB78 822 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 OSR1Q8TAX0 266 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 NOC3LQ8WTT2 800 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 PSPC1Q8WXF1 523 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 NUDT16L1Q9BRJ7 211 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 KRTAP9-3Q9BYQ3 159 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 IKZF4Q9H2S9 585 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 SYNCQ9H7C4 482 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 ACTR5Q9H9F9 607 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 EIF2B3Q9NR50 452 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 RNF146Q9NTX7 359 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 SPATS2LQ9NUQ6 558 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 HAUS2Q9NVX0 235 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 LIMA1Q9UHB6 759 aaKnown RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 DHDHQ9UQ10 334 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 INSL6Q9Y581 213 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 HS3ST3A1Q9Y663 406 aa3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 ZNF335Q9H4Z2 1342 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P27-201ENST00000431429 PDS5BQ9NTI5 1447 aa3.34□□□□□ -1.88
HMGB1P27-201ENST00000431429 NCAPD3P42695 1498 aa3.34□□□□□ -1.88
HMGB1P27-201ENST00000431429 TRBV5-3A0A0A0MS03 114 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 KIR2DS5A0A0G2JLQ3 304 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CDRT15L2A8MXV6 281 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 NPIPB11E5RHQ5 1161 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 KIR2DS3K7RE56 304 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 VILLO15195 856 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 RNMTO43148 476 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 TLX3O43711 291 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PLOD3O60568 738 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 SEC31AO94979 1220 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 TOP3BO95985 862 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 SPARCP09486 303 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CSH1P0DML2 217 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CSH2P0DML3 217 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 NR2F1P10589 423 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 UNGP13051 313 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CDAP32320 146 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 BUD31P41223 144 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PTH2RP49190 550 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CXCR3P49682 368 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CLCNKBP51801 687 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 HDAC4P56524 1084 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CLDN2P57739 230 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 YWHAZP63104 245 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 NEXNQ0ZGT2 675 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 EPS8Q12929 822 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CSTF3Q12996 717 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 GALNT3Q14435 633 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 IRF3Q14653 427 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 TAF11Q15544 211 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PLEKHS1Q5SXH7 462 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 TMEM268Q5VZI3 342 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 ISM2Q6H9L7 571 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 TTI2Q6NXR4 508 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PDXDC1Q6P996 788 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 AAGABQ6PD74 315 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 KLHL24Q6TFL4 600 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 ZNF782Q6ZMW2 699 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 KRBA2Q6ZNG9 492 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 FAM83HQ6ZRV2 1179 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 ENOSF1Q7L5Y1 443 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PRIMA1Q86XR5 153 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 DDIASQ8IXT1 998 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 ZDHHC23Q8IYP9 409 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CADM3Q8N126 398 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 GALNT16Q8N428 558 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 MCPH1Q8NEM0 835 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 DNAAF1Q8NEP3 725 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 HASPINQ8TF76 798 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 DPF1Q92782 380 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 MSI2Q96DH6 328 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 WDFY2Q96P53 400 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CENPOQ9BU64 300 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 IFT27Q9BW83 186 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 R3HDMLQ9H3Y0 253 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 POLR1BQ9H9Y6 1135 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 WDR6Q9NNW5 1121 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 ASAH2Q9NR71 780 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PAPOLBQ9NRJ5 636 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 AGO2Q9UKV8 859 aaKnown RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 MKLN1Q9UL63 735 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 CORO1CQ9ULV4 474 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 LAMP3Q9UQV4 416 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 PCDHGB5Q9Y5G0 923 aa3.33□□□□□ -1.88
HMGB1P27-201ENST00000431429 A0A0U1RQF3 1178 aa3.32□□□□□ -1.88
HMGB1P27-201ENST00000431429 FAM237BA0A1B0GVD1 139 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms