RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 FAM90A22PA8MWA6 464 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 FAM90A12PA8MX19 464 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 FAM90A23PA8MXZ1 464 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KPNA7A9QM74 516 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZNF213O14771 459 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TRIM24O15164 1050 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GPRIN2O60269 458 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SEC22BO75396 215 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GCNT3O95395 438 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SNRPA1P09661 255 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 NNMTP40261 264 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CDK18Q07002 472 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TCF15Q12870 199 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 RIN1Q13671 783 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 NR1I3Q14994 352 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 COL28A1Q2UY09 1125 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 FAM47AQ5JRC9 791 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 C17orf99Q6UX52 265 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DBX2Q6ZNG2 339 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DSG4Q86SJ6 1040 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TDRD5Q8NAT2 981 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 KCNN1Q92952 543 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TSPAN17Q96FV3 270 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZPBPQ9BS86 351 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 FUZQ9BT04 418 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KATNBL1Q9H079 304 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SLC28A3Q9HAS3 691 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 PDRG1Q9NUG6 133 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 USP40Q9NVE5 1235 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 THEGQ9P2T0 379 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MTRRQ9UBK8 725 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SLC25A10Q9UBX3 287 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 NENFQ9UMX5 172 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SMG5Q9UPR3 1016 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 SNX8Q9Y5X2 465 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 PMF1-BGLAPU3KQ54 211 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ROBO3Q96MS0 1386 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 FAM170AA1A519 330 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PRR19A6NJB7 356 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MYO1GB0I1T2 1018 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 EIF3CLB5ME19 914 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 PER2O15055 1255 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MCF2LO15068 1137 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 LDLRAD4O15165 306 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SRGAP3O43295 1099 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TRIM13O60858 407 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 URODP06132 367 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 FYNP06241 537 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 DLDP09622 509 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 CPT2P23786 658 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MGAT1P26572 445 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ARCN1P48444 511 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 CD151P48509 253 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GPC3P51654 580 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GALCP54803 685 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MEF2AQ02078 507 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 TAF7Q15545 349 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF674Q2M3X9 581 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CYP20A1Q6UW02 462 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SLC9B2Q86UD5 537 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 AACSQ86V21 672 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CAND1Q86VP6 1230 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 RHOT2Q8IXI1 618 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GHDCQ8N2G8 530 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 AVL9Q8NBF6 648 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TOR1AIP2Q8NFQ8 470 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF483Q8TF39 744 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 SLC5A11Q8WWX8 675 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GFM2Q969S9 779 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 PTERQ96BW5 349 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CNDP1Q96KN2 507 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 HS6ST2Q96MM7 605 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PRRX2Q99811 253 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SPATA5L1Q9BVQ7 753 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ACTRT3Q9BYD9 372 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 OR10A2Q9H208 303 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TP63Q9H3D4 680 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 NSUN3Q9H649 340 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 SEMA4BQ9NPR2 832 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 SIRT3Q9NTG7 399 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 EXTL2Q9UBQ6 330 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 NDRG4Q9ULP0 352 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 SHOC2Q9UQ13 582 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 hCG_1809904A0A1W2PP81 198 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 A0A1W2PPE2 198 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 A0A1W2PR64 198 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 A4D1N5 150 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CCDC151A5D8V7 595 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SH2D7A6NKC9 451 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 PRR5-ARHGAP8B1AHC4 643 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TLR2O60603 784 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ENTPD3O75355 529 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 REC8O95072 547 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SIX3O95343 332 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 GASTP01350 101 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ITGB8P26012 769 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 POU1F1P28069 291 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 RBL1P28749 1068 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GRK5P34947 590 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 HTR7P34969 479 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms