RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PIN4Q9Y237 131 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 CEP83Q9Y592 693 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CDY1Q9Y6F8 540 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 MYO9BQ13459 2157 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 WDR81Q562E7 1941 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 PHLPP2Q6ZVD8 1323 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 LOC102723971A0A1B0GUV8 181 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 AREL1O15033 823 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 FFAR2O15552 330 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 USO1O60763 962 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 VNN1O95497 513 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 PECAM1P16284 738 aaPredicted RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 AXLP30530 894 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 POU5F1BQ06416 359 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 PIGFQ07326 219 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 LAMTOR4Q0VGL1 99 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 FZD5Q13467 585 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 SLC29A2Q14542 456 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CCDC38Q502W7 563 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 RBM20Q5T481 1227 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 TMTC4Q5T4D3 741 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 TMCO2Q7Z6W1 182 aaPredicted RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 CATSPER3Q86XQ3 398 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 LINC01465Q8N7H1 131 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 RNF149Q8NC42 400 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 MYRIPQ8NFW9 859 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 PIGOQ8TEQ8 1089 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 TMEM143Q96AN5 459 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 SH2D3AQ9BRG2 576 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 KRTAP4-8Q9BYQ9 185 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 TRIM6Q9C030 488 aaPredicted RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 LMAN2LQ9H0V9 348 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 ZSCAN16Q9H4T2 348 aaPredicted RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 AKIP1Q9NQ31 210 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 FSD2A1L4K1 749 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 TMEM150BA6NC51 233 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 INO80B-WBP1J3KQ70 363 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 ACKR2O00590 384 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 ERN1O75460 977 aaKnown RBP6.81□□□□□ -1.32
USP40-202ENST00000409945 HGFP14210 728 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 UBA7P41226 1012 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 RARRES1P49788 294 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 KRT17Q04695 432 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 GPM6BQ13491 265 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 FHL3Q13643 280 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 ZRSR1Q15695 479 aaKnown RBP6.81□□□□□ -1.32
USP40-202ENST00000409945 BEAN1Q3B7T3 259 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 EPC2Q52LR7 807 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 ARHGAP40Q5TG30 622 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 CACHD1Q5VU97 1274 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 CACNA2D3Q8IZS8 1091 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 GPATCH11Q8N954 259 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 URGCPQ8TCY9 931 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 KIFAP3Q92845 792 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 CCDC51Q96ER9 411 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 TIPINQ9BVW5 301 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.81□□□□□ -1.32
USP40-202ENST00000409945 TMEM117Q9H0C3 514 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 DEF6Q9H4E7 631 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 UBN1Q9NPG3 1134 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 SERHLQ9NQF3 203 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 SERTAD3Q9UJW9 196 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 COG5Q9UP83 839 aa6.81□□□□□ -1.32
USP40-202ENST00000409945 LOXHD1Q8IVV2 1947 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 A0A0U1RQF3 1178 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 VWA3AA6NCI4 1184 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 LRRIQ4A6NIV6 560 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 H3BNC9 293 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 PIP5K1BO14986 540 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 STBD1O95210 358 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 LAG3P18627 525 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ATICP31939 592 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 BMPR1AP36894 532 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 EFNA5P52803 228 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 RNASELQ05823 741 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 SCAPQ12770 1279 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 DYRK1AQ13627 763 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 TCTN1Q2MV58 587 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 RGS7BPQ6MZT1 257 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 JMJD6Q6NYC1 403 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 NOTUMQ6P988 496 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 TTLL10Q6ZVT0 673 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 BEND5Q7L4P6 421 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 CCDC28AQ8IWP9 274 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 LRRC43Q8N309 656 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 DNAJB14Q8TBM8 379 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 P2RX5Q93086 422 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ZNF668Q96K58 619 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 ZBTB45Q96K62 511 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 ZNF396Q96N95 335 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 PPP1R9BQ96SB3 815 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ADPGKQ9BRR6 497 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 SORBS1Q9BX66 1292 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 KLC2Q9H0B6 622 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 SIK2Q9H0K1 926 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 POLR3FQ9H1D9 316 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 DDX19AQ9NUU7 478 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 THEGQ9P2T0 379 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 STK39Q9UEW8 545 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 NDRG4Q9ULP0 352 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms