RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 E9PAM4 449 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 MLNP12872 115 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 COX4I1P13073 169 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
VPS54-203ENST00000409558 LRPAP1P30533 357 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 PPP1R3AQ16821 1122 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 GK5Q6ZS86 529 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ABI1Q8IZP0 508 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 HDAC10Q969S8 669 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 IL22Q9GZX6 179 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 SEMA6AQ9H2E6 1030 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 PIF1Q9H611 641 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 GLOD4Q9HC38 313 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 SMPD4Q9NXE4 827 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 A0A088AWK7 358 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 G3V2L1 256 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 KCNA5P22460 613 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 MAGEA6P43360 314 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 NSUN2Q08J23 767 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS54-203ENST00000409558 KLF10Q13118 480 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 NAIF1Q69YI7 327 aaPredicted RBP13.55□□□□□ -0.24
VPS54-203ENST00000409558 ARCQ7LC44 396 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ZC3HC1Q86WB0 502 aaKnown RBP13.55□□□□□ -0.24
VPS54-203ENST00000409558 MFSD6LQ8IWD5 586 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 EFHBQ8N7U6 833 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 PIP4K2CQ8TBX8 421 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 HEXDCQ8WVB3 486 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ZNF333Q96JL9 665 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 NAT9Q9BTE0 207 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 CDH19Q9H159 772 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 GPAMQ9HCL2 828 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 HS3ST4Q9Y661 456 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 HHLA1C9JL84 531 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 BIRC5O15392 142 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 F9P00740 461 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ETS2P15036 469 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ATP6V1C1P21283 382 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 RALGDSQ12967 914 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 KRT72Q14CN4 511 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ZRSR2Q15696 482 aaKnown RBP13.55□□□□□ -0.24
VPS54-203ENST00000409558 ANO4Q32M45 955 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 KLHDC9Q8NEP7 349 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 V9GYQ6 96 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 PEX1O43933 1283 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 DLX3O60479 287 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ALDH1A2O94788 518 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 ACVRL1P37023 503 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 DLG1Q12959 904 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 NEPROQ6NW34 567 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 OR9I1Q8NGQ6 314 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 KCTD13Q8WZ19 329 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 HBEGFQ99075 208 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 CASS4Q9NQ75 786 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 UXTQ9UBK9 157 aaPredicted RBP13.55□□□□□ -0.24
VPS54-203ENST00000409558 FBXO5Q9UKT4 447 aa13.55□□□□□ -0.24
VPS54-203ENST00000409558 TPST1O60507 370 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GPC4O75487 556 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 SEMG2Q02383 582 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 DNAL1Q4LDG9 190 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 STEAP4Q687X5 459 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GLB1LQ6UWU2 654 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 TMEM135Q86UB9 458 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 NT5C3BQ969T7 300 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 BPIFA1Q9NP55 256 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 CDH22Q9UJ99 828 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 CDY1Q9Y6F8 540 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 HAS3O00219 553 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 PPP6CO00743 305 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 KLF11O14901 512 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 TIMM44O43615 452 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GRK2P25098 689 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 CNTFP26441 200 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 ARSDP51689 593 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GALNT2Q10471 571 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 LPIN1Q14693 890 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 CTXN3Q4LDR2 81 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GPR158Q5T848 1215 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 THEMIS2Q5TEJ8 643 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 MFSD14CQ5VZR4 134 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 SCD5Q86SK9 330 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 FBXO32Q969P5 355 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 RMDN1Q96DB5 314 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 EBF3Q9H4W6 596 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 FAM96AQ9H5X1 160 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 ZFYVE28Q9HCC9 887 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 FBRSL1Q9HCM7 1045 aaKnown RBP13.54□□□□□ -0.24
VPS54-203ENST00000409558 ERI2A8K979 691 aaKnown RBP13.54□□□□□ -0.24
VPS54-203ENST00000409558 TRAFD1O14545 582 aaPredicted RBP13.54□□□□□ -0.24
VPS54-203ENST00000409558 IRAK2O43187 625 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 KLHL2O95198 593 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 SLC35E2BP0CK96 405 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 ITGAXP20702 1163 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 CCNHP51946 323 aaPredicted RBP13.54□□□□□ -0.24
VPS54-203ENST00000409558 C16orf59Q7L2K0 433 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 TBATAQ96M53 351 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GMPR2Q9P2T1 348 aaKnown RBP13.54□□□□□ -0.24
VPS54-203ENST00000409558 ANGPTL2Q9UKU9 493 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 ARL5AQ9Y689 179 aa13.54□□□□□ -0.24
VPS54-203ENST00000409558 GPR39O43194 453 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 SIX3O95343 332 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms