RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 EPHB2P29323 1055 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 HLA-FP30511 346 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ARL4AP40617 200 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 DGKGP49619 791 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 OXCT1P55809 520 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 TPI1P60174 286 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ETF1P62495 437 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 IRX4P78413 519 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 MRPS21P82921 87 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 ARHGAP8P85298 464 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 KLF1Q13351 362 aaPredicted RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 PAFAH1B3Q15102 231 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 USP39Q53GS9 565 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 TFDP3Q5H9I0 405 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 PMS2CLQ68D20 193 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 IL31Q6EBC2 164 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 MFSD7Q6UXD7 560 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 KIAA1324Q6UXG2 1013 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 SPOCD1Q6ZMY3 1216 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 CYP2U1Q7Z449 544 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ZSCAN30Q86W11 494 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 RASSF3Q86WH2 238 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ARHGAP12Q8IWW6 846 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 CHPFQ8IZ52 775 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 CFAP52Q8N1V2 620 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 SLC35F6Q8N357 371 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 C17orf53Q8N3J3 647 aaPredicted RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 LZTR1Q8N653 840 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 UBL4BQ8N7F7 174 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 PLD5Q8N7P1 536 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 KCTD6Q8NC69 237 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 OR52K2Q8NGK3 314 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 WFDC5Q8TCV5 224 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 NETO1Q8TDF5 533 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 DDI1Q8WTU0 396 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 WDR24Q96S15 920 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 RTKNQ9BST9 563 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 LRRC19Q9H756 370 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 CATSPERBQ9H7T0 1116 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 NDFIP2Q9NV92 336 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 DONSONQ9NYP3 566 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 MPP6Q9NZW5 540 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 GOLGA4Q13439 2230 aaKnown RBP9.4□□□□□ -0.91
VPS53-203ENST00000401468 LRRK1Q38SD2 2015 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 A0A1W2PQF6 199 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 TYW5A2RUC4 315 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 LRRD1A4D1F6 860 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 CREB3O43889 395 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 SRGAP2O75044 1071 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 RHOBTB1O94844 696 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 KRT1P04264 644 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 TUBB4AP04350 444 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 CFIP05156 583 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 P2RY2P41231 377 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 SSR1P43307 286 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 TNFRSF4P43489 277 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 NDST2P52849 883 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 YBEYP58557 167 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 ZNF177Q13360 481 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 RPS6KA1Q15418 735 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 MAP7D1Q3KQU3 841 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 PPP6R3Q5H9R7 873 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 FSCBQ5H9T9 825 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 ZNF569Q5MCW4 686 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 EOGTQ5NDL2 527 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 N4BP2L1Q5TBK1 243 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 PAPD7Q5XG87 772 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 NCBP2-AS2Q69YL0 99 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 PSAPL1Q6NUJ1 521 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 BBS12Q6ZW61 710 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 ADIPOR2Q86V24 386 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 FAM124AQ86V42 546 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 CIR1Q86X95 450 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 MFN1Q8IWA4 741 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 GPR161Q8N6U8 529 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 NPWQ8N729 165 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 CYB5D2Q8WUJ1 264 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 FATE1Q969F0 183 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 EXOC4Q96A65 974 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 ZC3H10Q96K80 434 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 XPO6Q96QU8 1125 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 HERPUD2Q9BSE4 406 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 ACE2Q9BYF1 805 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 MAGEH1Q9H213 219 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 MTG2Q9H4K7 406 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 POLMQ9NP87 494 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 ETNK2Q9NVF9 386 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 KLHL11Q9NVR0 708 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 EBF1Q9UH73 591 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 INTS6Q9UL03 887 aaKnown RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 TTC7AQ9ULT0 858 aaPredicted RBP9.39□□□□□ -0.91
VPS53-203ENST00000401468 STARD13Q9Y3M8 1113 aa9.39□□□□□ -0.91
VPS53-203ENST00000401468 WDFY3Q8IZQ1 3526 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 ATP1A1P05023 1023 aaKnown RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 ZFXP17010 805 aaPredicted RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 AMPD1P23109 780 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 PRKCHP24723 683 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 OR1E1P30953 314 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms