RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SH3D19Q5HYK7 790 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 LRRC8EQ6NSJ5 796 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 TRIM74Q86UV6 250 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 TRIM73Q86UV7 250 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.24■□□□□ 0.99
CTCF-202ENST00000401394 TMEM114B3SHH9 223 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 PPP6CO00743 305 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 CNMDO75829 334 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 PENKP01210 267 aaPredicted RBP21.24■□□□□ 0.99
CTCF-202ENST00000401394 MT-ND1P03886 318 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 CHRM3P20309 590 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 RBM20Q5T481 1227 aaKnown RBP21.24■□□□□ 0.99
CTCF-202ENST00000401394 C9orf57Q5W0N0 161 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 CNTD1Q8N815 330 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 FAM47BQ8NA70 645 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 EGFL7Q9UHF1 273 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 USP2O75604 605 aaPredicted RBP21.24■□□□□ 0.99
CTCF-202ENST00000401394 CYP2B6P20813 491 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 CSHL1Q14406 222 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 KIAA0319Q5VV43 1072 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 ARHGAP17Q68EM7 881 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 OSMRQ99650 979 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 POMKQ9H5K3 350 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 ERAP1Q9NZ08 941 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 IGSF9Q9P2J2 1179 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 CDC14AQ9UNH5 594 aa21.24■□□□□ 0.99
CTCF-202ENST00000401394 BCAT1P54687 386 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 TAS2R39P59534 338 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 LPCAT2Q7L5N7 544 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 IPMKQ8NFU5 416 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 HEXDCQ8WVB3 486 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 ISL2Q96A47 359 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 FAM96AQ9H5X1 160 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 CASS4Q9NQ75 786 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 EIF2B3Q9NR50 452 aaKnown RBP21.23■□□□□ 0.99
CTCF-202ENST00000401394 ARHGAP10A1A4S6 786 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 HACD1B0YJ81 288 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 RECQL4O94761 1208 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 MPOP05164 745 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 NCAM1P13591 858 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 PSMD7P51665 324 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 KCTD11Q693B1 232 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 CANT1Q8WVQ1 401 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 GPR78Q96P69 363 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 ELP3Q9H9T3 547 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 TMEM165Q9HC07 324 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 SSC5DA1L4H1 1573 aa21.23■□□□□ 0.99
CTCF-202ENST00000401394 TARM1B6A8C7 271 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 BOLA2-SMG1P6H3BVE0 249 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 GAS2O43903 313 aaKnown RBP21.22■□□□□ 0.99
CTCF-202ENST00000401394 ARHGEF38Q9NXL2 777 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 TTC24A2A3L6 582 aaPredicted RBP21.22■□□□□ 0.99
CTCF-202ENST00000401394 NR1H2P55055 460 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 PRKAA1Q13131 559 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 ANO4Q32M45 955 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 PAQR9Q6ZVX9 377 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 STYXQ8WUJ0 223 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 MCMBPQ9BTE3 642 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 MUC3BQ9H195 1237 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 AURKCQ9UQB9 309 aa21.22■□□□□ 0.99
CTCF-202ENST00000401394 DDHD2O94830 711 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 USP17L7P0C7H9 530 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 ARNTP27540 789 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 YAP1P46937 504 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 TPI1P60174 286 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 EXT2Q93063 718 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 ELMO2Q96JJ3 720 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 NAT9Q9BTE0 207 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 DOCK1Q14185 1865 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 CES1P23141 567 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 ADCYAP1R1P41586 468 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 PLOD1Q02809 727 aaPredicted RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 SULT2A1Q06520 285 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 TRIM25Q14258 630 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 TMEM259Q4ZIN3 620 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 KRT80Q6KB66 452 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 STRADAQ7RTN6 431 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 ZFRQ96KR1 1074 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 GPR22Q99680 433 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 NAA50Q9GZZ1 169 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 SIK2Q9H0K1 926 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 RSL24D1Q9UHA3 163 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 GTF2IRD1Q9UHL9 959 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 V9GYQ6 96 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 PAPPA2Q9BXP8 1791 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 GRIA3P42263 894 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 TKTL1P51854 596 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 CDH13P55290 713 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 REP15Q6BDI9 236 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 OFCC1Q8IZS5 231 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 CPSF7Q8N684 471 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 SPPL2BQ8TCT7 592 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 ULBP1Q9BZM6 244 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 BRD8Q9H0E9 1235 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 SNX25Q9H3E2 840 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 CACNA2D2Q9NY47 1150 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 NDUFA13Q9P0J0 144 aa21.21■□□□□ 0.99
CTCF-202ENST00000401394 CNOT6Q9ULM6 557 aaKnown RBP21.21■□□□□ 0.99
CTCF-202ENST00000401394 STRNO43815 780 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ADRA1BP35368 520 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms