RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 F7P08709 466 aaPredicted RBP18.75■□□□□ 0.59
USP48-204ENST00000400301 IQCF3P0C7M6 154 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 NFKBIAP25963 317 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 PKD2L2Q9NZM6 624 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 FAM50BQ9Y247 325 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ATP6AP2A0A1C7CYW4 349 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 SYCE1LA8MT33 242 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 SPTLC1O15269 473 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ITM2AO43736 263 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ATP6AP2O75787 350 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 PIRTP0C851 137 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 BLMHQ13867 455 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 DDR2Q16832 855 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ARFGAP1Q8N6T3 406 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 KLF11O14901 512 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 FOXD4Q12950 439 aaPredicted RBP18.75■□□□□ 0.59
USP48-204ENST00000400301 RALGPS1Q5JS13 557 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 INTS6LQ5JSJ4 861 aaKnown RBP18.75■□□□□ 0.59
USP48-204ENST00000400301 NXNL1Q96CM4 212 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ZYG11BQ9C0D3 744 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 TAS2R13Q9NYV9 303 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 KANSL3Q9P2N6 904 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 TRAFD1O14545 582 aaPredicted RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 STAU1O95793 577 aaKnown RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 IDH3AP50213 366 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 MPP1Q00013 466 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 OLIG2Q13516 323 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 ANKS6Q68DC2 871 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 HDAC10Q969S8 669 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 LENG8Q96PV6 779 aaPredicted RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 SEMA3CQ99985 751 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 BEGAINQ9BUH8 593 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 RRAGCQ9HB90 399 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 OR4Q2P0C623 313 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 TUSC3Q13454 348 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 PFKFB4Q16877 469 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 TMCO4Q5TGY1 634 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 TTC33Q6PID6 262 aaPredicted RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 ZNF786Q8N393 782 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 TEKT5Q96M29 485 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 DNAJC28Q9NX36 388 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.74■□□□□ 0.59
USP48-204ENST00000400301 PCDHB12Q9Y5F1 795 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 TBX10O75333 385 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 ALDH7A1P49419 539 aaKnown RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 ARHGDIAP52565 204 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 LPCAT4Q643R3 524 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 LRRC49Q8IUZ0 686 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 S100A14Q9HCY8 104 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 ATP13A1Q9HD20 1204 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 OLA1Q9NTK5 396 aaKnown RBP18.74■□□□□ 0.59
USP48-204ENST00000400301 CNTN3Q9P232 1028 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 SNX5Q9Y5X3 404 aa18.74■□□□□ 0.59
USP48-204ENST00000400301 SAC3D1A6NKF1 404 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 CLASP2O75122 1294 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 DLDP09622 509 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 FGFR1P11362 822 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 PSME3P61289 254 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 CDH18Q13634 790 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 ESRP1Q6NXG1 681 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 DHFR2Q86XF0 187 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 C16orf70Q9BSU1 422 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 SEMA6AQ9H2E6 1030 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 CDH22Q9UJ99 828 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 CRLS1Q9UJA2 301 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 LSM7Q9UK45 103 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 RFPL1O75677 317 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 EEF1DP29692 281 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 OSTM1Q86WC4 334 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 FBXW8Q8N3Y1 598 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 OR52K2Q8NGK3 314 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 ADNPQ9H2P0 1102 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 FAM58BPP0C7Q3 252 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 AARS2Q5JTZ9 985 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 SAMD4BQ5PRF9 694 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 TBCELQ5QJ74 424 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 PTGR2Q8N8N7 351 aaPredicted RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 BRI3BPQ8WY22 251 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 VPS50Q96JG6 964 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 RTKNQ9BST9 563 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 UXTQ9UBK9 157 aaPredicted RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 SLC7A8Q9UHI5 535 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 SLC8A2Q9UPR5 921 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 NDUFAF1Q9Y375 327 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 H7C4K7 107 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 OAS1P00973 400 aaKnown RBP18.73■□□□□ 0.59
USP48-204ENST00000400301 VAV1P15498 845 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 FMO4P31512 558 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 GSTA3Q16772 222 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 ZNF792Q3KQV3 632 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 RIN3Q8TB24 985 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 GPR152Q8TDT2 470 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 PIF1Q9H611 641 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 TRPM5Q9NZQ8 1165 aa18.73■□□□□ 0.59
USP48-204ENST00000400301 HIST1H2AGP0C0S8 130 aaPredicted RBP18.72■□□□□ 0.59
USP48-204ENST00000400301 HIST1H2ADP20671 130 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 LRPAP1P30533 357 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 GRIK3Q13003 919 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 FRG1Q14331 258 aaKnown RBP18.72■□□□□ 0.59
USP48-204ENST00000400301 METTL21CQ5VZV1 264 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms