RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ATXN2Q99700 1313 aaKnown RBP22.04■■□□□ 1.12
CLN3-207ENST00000395653 C10orf142B7Z368 130 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 RNF103O00237 685 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 PLK4O00444 970 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 KRIT1O00522 736 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 PLRG1O43660 514 aaKnown RBP22.04■■□□□ 1.12
CLN3-207ENST00000395653 ITGB7P26010 798 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 GALNT2Q10471 571 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 CCDC6Q16204 474 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 IFI16Q16666 785 aaKnown RBP22.04■■□□□ 1.12
CLN3-207ENST00000395653 SLC9A4Q6AI14 798 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 NCEH1Q6PIU2 408 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 PRR23CQ6ZRP0 262 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 RABEPKQ7Z6M1 372 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 RGL4Q8IZJ4 473 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 CINPQ9BW66 212 aaPredicted RBP22.04■■□□□ 1.12
CLN3-207ENST00000395653 HDAC8Q9BY41 377 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 EVLQ9UI08 416 aaPredicted RBP22.04■■□□□ 1.12
CLN3-207ENST00000395653 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-207ENST00000395653 ADGRG1Q9Y653 693 aa22.04■■□□□ 1.12
CLN3-207ENST00000395653 NUMA1Q14980 2115 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 PEX11BO96011 259 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 CSNK1DP48730 415 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 LBRQ14739 615 aaKnown RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 PIP5KL1Q5T9C9 394 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 KIAA0895LQ68EN5 471 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 ERN2Q76MJ5 926 aaKnown RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 KIAA2013Q8IYS2 634 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 KATNAL2Q8IYT4 538 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 KIAA1524Q8TCG1 905 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 RNF25Q96BH1 459 aaPredicted RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 EXOC2Q96KP1 924 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 PSKH2Q96QS6 385 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 CPEB1Q9BZB8 566 aaKnown RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 SUSD2Q9UGT4 822 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 SEPT3Q9UH03 358 aa22.03■■□□□ 1.12
CLN3-207ENST00000395653 TPX2Q9ULW0 747 aaKnown RBP22.03■■□□□ 1.12
CLN3-207ENST00000395653 FAM47DPA6NHR8 397 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 GKP32189 559 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 GARSP41250 739 aaKnown RBP22.02■■□□□ 1.12
CLN3-207ENST00000395653 NEK3P51956 506 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 LMNB2Q03252 620 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 NSUN2Q08J23 767 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-207ENST00000395653 SLC10A7Q0GE19 358 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 GRM3Q14832 879 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 TAZQ16635 292 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 ZNF805Q5CZA5 627 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 MFSD7Q6UXD7 560 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 PLD5Q8N7P1 536 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 LRRC57Q8N9N7 239 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 TSEN2Q8NCE0 465 aaKnown RBP22.02■■□□□ 1.12
CLN3-207ENST00000395653 CEP76Q8TAP6 659 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 NSMCE1Q8WV22 266 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 BIRC7Q96CA5 298 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 MAK16Q9BXY0 300 aaKnown RBP22.02■■□□□ 1.12
CLN3-207ENST00000395653 SMOC1Q9H4F8 434 aa22.02■■□□□ 1.12
CLN3-207ENST00000395653 RALGAPA1Q6GYQ0 2036 aa22.02■■□□□ 1.11
CLN3-207ENST00000395653 A0A0U1RQJ8 604 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 MACROD2A1Z1Q3 448 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 GRID2IPA4D2P6 1211 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 KHNYNO15037 678 aaKnown RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 FSBPO95073 299 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 IGHV4-34P06331 123 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 GNSP15586 552 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 ZFXP17010 805 aaPredicted RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 MX2P20592 715 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 MAOBP27338 520 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 CTNNA1P35221 906 aaKnown RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 HSPA9P38646 679 aaKnown RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 CDKN2BP42772 138 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 MARCKSL1P49006 195 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 RENBPP51606 427 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 CCR5P51681 352 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 GBE1Q04446 702 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 SF3A2Q15428 464 aaKnown RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 DUOXA1Q1HG43 343 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 SLC23A3Q6PIS1 610 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 GDPD4Q6W3E5 623 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 C12orf50Q8NA57 414 aaPredicted RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 DTLQ9NZJ0 730 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 TRIM10Q9UDY6 481 aa22.01■■□□□ 1.11
CLN3-207ENST00000395653 EIF2B4Q9UI10 523 aaKnown RBP22.01■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3DA0A087WVF3 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3IA0A087WXS9 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3EA0A087X179 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3KA0A087X1G2 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3FA6NER0 549 aaPredicted RBP22■■□□□ 1.11
CLN3-207ENST00000395653 PATE3B3GLJ2 98 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3LB9A6J9 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 APOL1O14791 398 aa22■■□□□ 1.11
CLN3-207ENST00000395653 NRDCO43847 1150 aa22■■□□□ 1.11
CLN3-207ENST00000395653 ZRANB2O95218 330 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-207ENST00000395653 UGT2B4P06133 528 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3HP0C7X1 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 RGRP47804 291 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TAS2R38P59533 333 aa22■■□□□ 1.11
CLN3-207ENST00000395653 ZNF235Q14590 738 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TRIM61Q5EBN2 209 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3GQ6DHY5 549 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms