RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IRGMA1A4Y4 181 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 STARP49675 285 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PLK1P53350 603 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 IKBKEQ14164 716 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 RAET1GQ6H3X3 334 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 B3GNT6Q6ZMB0 384 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ALG9Q9H6U8 611 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 MORF4L1Q9UBU8 362 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF780BQ9Y6R6 833 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 AVILO75366 819 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 SH3BGRLO75368 114 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 NR2F1P10589 423 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 TSC22D1Q15714 1073 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 TTC23Q5W5X9 447 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 TPGS1Q6ZTW0 290 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 TEX47Q8TBZ9 253 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 VPS45Q9NRW7 570 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 MCIDASD6RGH6 385 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PECAM1P16284 738 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 FGFR3P22607 806 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PSEN1P49768 467 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 CLCN5P51795 746 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 NR1D2Q14995 579 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 AMER2Q8N7J2 671 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 KBTBD8Q8NFY9 601 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PHF10Q8WUB8 498 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ABHD16BQ9H3Z7 469 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 EPB41L1Q9H4G0 881 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ASB8Q9H765 288 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 CAB39LQ9H9S4 337 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 MFHAS1Q9Y4C4 1052 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 GMPPBQ9Y5P6 360 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ADCY6O43306 1168 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 SNRPB2P08579 225 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MIPP30301 263 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 FSCN1Q16658 493 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MIIPQ5JXC2 388 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 TXNDC11Q6PKC3 985 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 EFCAB3Q8N7B9 438 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 POU5F2Q8N7G0 328 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PRCCQ92733 491 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 KAT5Q92993 513 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ARHGAP20Q9P2F6 1191 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 TBC1D30Q9Y2I9 924 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 CCDC162PA2VCL2 907 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PDE2AO00408 941 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 CXCL11O14625 94 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PIGNO95427 931 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ADARP55265 1226 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 TAF5Q15542 800 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 LSM12Q3MHD2 195 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 FAM83AQ86UY5 434 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 STX12Q86Y82 276 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PTCD3Q96EY7 689 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC4A5Q9BY07 1137 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 RBM7Q9Y580 266 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 BTN3A3O00478 584 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PROCP04070 461 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF37AP17032 561 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 CD86P42081 329 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 IDH2P48735 452 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 QPRTQ15274 297 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ABRAXAS1Q6UWZ7 409 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ADGRG2Q8IZP9 1017 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF607Q96SK3 696 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 RIOX1Q9H6W3 641 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 NUDT5Q9UKK9 219 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 LIN7AO14910 233 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 CHRNGP07510 517 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 BNC1Q01954 994 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 GRIN3AQ8TCU5 1115 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MAGEE2Q8TD90 523 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 C18orf25Q96B23 403 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PDCD2LQ9BRP1 358 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 SPAG4Q9NPE6 437 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 DMGDHQ9UI17 866 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MSRAQ9UJ68 235 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF222Q9UK12 451 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ING4Q9UNL4 249 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MAGEB3O15480 346 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 TNFRSF21O75509 655 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 TCF4P15884 667 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ADSSP30520 456 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 C1QTNF1Q9BXJ1 281 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MRTO4Q9UKD2 239 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZC3H13Q5T200 1668 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 MOXD2PA6NHM9 499 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 STX16-NPEPL1H3BU86 382 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 STX16O14662 325 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ADORA2AP29274 412 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 HAVCR1Q96D42 359 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF354BQ96LW1 612 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 PDGFDQ9GZP0 370 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 HPSEQ9Y251 543 aa12.91□□□□□ -0.34
CCDC88C-204ENST00000389857 SNAP91O60641 907 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 IL1R1P14778 569 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SOX10P56693 466 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 DCTN2Q13561 401 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms