RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TERB1Q8NA31 727 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 KDM1BQ8NB78 822 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 UCMAQ8WVF2 138 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 RTP4Q96DX8 246 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 DHX35Q9H5Z1 703 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 PPCSQ9HAB8 311 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 USP29Q9HBJ7 922 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 RYDENQ9NUL5 291 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 GGA2Q9UJY4 613 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ACTL7BQ9Y614 415 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 HELZP42694 1942 aaKnown RBP10.38□□□□□ -0.75
VPS53-202ENST00000389040 TTC28Q96AY4 2481 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 TCRBV7S3A2A0A539 114 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 ILVBLA1L0T0 632 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 BCLAF3A2AJT9 711 aaKnown RBP10.38□□□□□ -0.75
VPS53-202ENST00000389040 FOXO6A8MYZ6 492 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 MYO1CO00159 1063 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 KCNN4O15554 427 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 TSPAN3O60637 253 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 LRIG2O94898 1065 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 CHRNB1P11230 501 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 ZFXP17010 805 aaPredicted RBP10.38□□□□□ -0.75
VPS53-202ENST00000389040 DRD4P21917 467 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 GCAP28676 217 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 PHBP35232 272 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 ARL4AP40617 200 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 MSS51Q4VC12 460 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 TXNDC11Q6PKC3 985 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 PDIK1LQ8N165 341 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 FBXL6Q8N531 539 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 ATP11CQ8NB49 1132 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 PYROXD1Q8WU10 500 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 IGSF8Q969P0 613 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 ZNF317Q96PQ6 595 aaPredicted RBP10.38□□□□□ -0.75
VPS53-202ENST00000389040 TMEM248Q9NWD8 314 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 PAK5Q9P286 719 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 BDP1A6H8Y1 2624 aa10.38□□□□□ -0.75
VPS53-202ENST00000389040 NCOR1O75376 2440 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CHURC1-FNTBB4DL54 471 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 H3BRJ5 948 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ASLP04424 464 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 HNRNPLP14866 589 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS53-202ENST00000389040 RBL1P28749 1068 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 EPHB2P29323 1055 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 HLA-FP30511 346 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 OR1E1P30953 314 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 SOX9P48436 509 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 NR2C2P49116 596 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CORO7P57737 925 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 YBEYP58557 167 aaPredicted RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 GPX6P59796 221 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 KCNJ11Q14654 390 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 UBXN2BQ14CS0 331 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PON2Q15165 354 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 GKAP1Q5VSY0 366 aaPredicted RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 FSTL4Q6MZW2 842 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PPP1R21Q6ZMI0 780 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CAPN12Q6ZSI9 719 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 C14orf80Q86SX3 495 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 METTL3Q86U44 580 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 LRRC49Q8IUZ0 686 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CDKL3Q8IVW4 592 aaPredicted RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 SRRM1Q8IYB3 904 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 NAT16Q8N8M0 369 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 TTC8Q8TAM2 541 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 DYDC1Q8WWB3 177 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 MAML1Q92585 1016 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 TTC17Q96AE7 1141 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ACDQ96AP0 544 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 LMLNQ96KR4 655 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CSPG4P5Q96PW8 444 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 KCTD15Q96SI1 283 aaPredicted RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 WDR83Q9BRX9 315 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 MAGEH1Q9H213 219 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 EPHX3Q9H6B9 360 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 KCNK9Q9NPC2 374 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PLK2Q9NYY3 685 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 SLC24A2Q9UI40 661 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RASA4BC9J798 803 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ANKRD65E5RJM6 399 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 POC1B-GALNT4F8VUJ3 575 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 K7EQS6 105 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 DLL1O00548 723 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RASA4O43374 803 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PABPC1P11940 636 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 TSHRP16473 764 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 TARSP26639 723 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 SLC6A11P48066 632 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 NDST2P52849 883 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 TPI1P60174 286 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 GBE1Q04446 702 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 SLC20A2Q08357 652 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 XRCC4Q13426 336 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 FZD5Q13467 585 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RASA2Q15283 850 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 TMEM31Q5JXX7 168 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ARTNQ5T4W7 220 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 IER5LQ5T953 404 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RFX8Q6ZV50 586 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 C12orf40Q86WS4 652 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms