RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SPNS2Q8IVW8 549 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 CCDC13Q8IYE1 715 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 FAM160A2Q8N612 972 aaPredicted RBP4.09□□□□□ -1.76
LIG4-201ENST00000356922 LZTR1Q8N653 840 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 PJA1Q8NG27 643 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 RLN3Q8WXF3 142 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ACDQ96AP0 544 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 EID2BQ96D98 161 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 PSKH2Q96QS6 385 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 APOL2Q9BQE5 337 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 C2orf49Q9BVC5 232 aaPredicted RBP4.09□□□□□ -1.76
LIG4-201ENST00000356922 C8orf33Q9H7E9 229 aaPredicted RBP4.09□□□□□ -1.76
LIG4-201ENST00000356922 GGT7Q9UJ14 662 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 PLA2G4CQ9UP65 541 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ATP8A1Q9Y2Q0 1164 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 SLCO1B1Q9Y6L6 691 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 LOC400499M0QZD8 3231 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ARHGAP42A6NI28 874 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 TRAFD1O14545 582 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 AURKAO14965 403 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 APODP05090 189 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PIRTP0C851 137 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 NFKB1P19838 968 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PSMB4P28070 264 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CCNHP51946 323 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 SATB1Q01826 763 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SIGLEC14Q08ET2 396 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 GRSF1Q12849 480 aaKnown RBP eCLIP4.08□□□□□ -1.76
LIG4-201ENST00000356922 HNRNPDQ14103 355 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 PDK1Q15118 436 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CRY1Q16526 586 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 HNRNPA1L2Q32P51 320 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 ARSIQ5FYB1 569 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MARC1Q5VT66 337 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SERPINA13PQ6UXR4 307 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PID1Q7Z2X4 250 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 GRIN3AQ8TCU5 1115 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CLDN23Q96B33 292 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SEMA3CQ99985 751 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 TRIM31Q9BZY9 425 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ETNK1Q9HBU6 452 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 UBA2Q9UBT2 640 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 INVSQ9Y283 1065 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SIT1Q9Y3P8 196 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ANKRD36A6QL64 1941 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CKAP5Q14008 2032 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MCF2LO15068 1137 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SPINT1O43278 529 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 BANF1O75531 89 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 LEFTY1O75610 366 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 AGTP01019 485 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ITGAVP06756 1048 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 DRD1P21728 446 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SERPINB6P35237 376 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CD86P42081 329 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 TNFRSF4P43489 277 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ZNF135P52742 658 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 IFI35P80217 286 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 TRAF2Q12933 501 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MSLNQ13421 630 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 PTPRCAPQ14761 206 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 FNDC3BQ53EP0 1204 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 INO80DQ53TQ3 878 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 ACBD5Q5T8D3 534 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 DENND5AQ6IQ26 1287 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 C22orf39Q6P5X5 142 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 DRICH1Q6PGQ1 229 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 ZNF783Q6ZMS7 281 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 RFLNAQ6ZTI6 216 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ZNF572Q7Z3I7 529 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 MMAAQ8IVH4 418 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 UBALD2Q8IYN6 164 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 AADATQ8N5Z0 425 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 C12orf50Q8NA57 414 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 TADA1Q96BN2 335 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 RTP4Q96DX8 246 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 NEUROG2Q9H2A3 272 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MFSD1Q9H3U5 465 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SP110Q9HB58 689 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PPM1HQ9ULR3 514 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 DRG1Q9Y295 367 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 TMEM221A6NGB7 291 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 M0R296 226 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 RIOK3O14730 519 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 PHF2O75151 1096 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 ZFXP17010 805 aaPredicted RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 NDUFV2P19404 249 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 CA5AP35218 305 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 DRD3P35462 400 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MMP13P45452 471 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SKOR1P84550 965 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PRKCQQ04759 706 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SRSF5Q13243 272 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 MTA1Q13330 715 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 XRCC4Q13426 336 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 SLC12A1Q13621 1099 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 MYLK3Q32MK0 819 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 HEATR6Q6AI08 1181 aaKnown RBP4.08□□□□□ -1.76
LIG4-201ENST00000356922 PELI3Q8N2H9 469 aa4.08□□□□□ -1.76
LIG4-201ENST00000356922 PDCD7Q8N8D1 485 aaKnown RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms