RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DPYSQ14117 519 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 VN1R5Q7Z5H4 357 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 SLCO6A1Q86UG4 719 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 SPATA6LQ8N4H0 392 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 RPRD1BQ9NQG5 326 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 H3BNX3 289 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 CST1P01037 141 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 PAGE2BQ5JRK9 111 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 MZT2BQ6NZ67 158 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 BTBD9Q96Q07 612 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 CAPN10Q9HC96 672 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 SQORQ9Y6N5 450 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 FAM155BO75949 473 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 RHOAP61586 193 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 GRIK3Q13003 919 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 MAPKAPK3Q16644 382 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 METTL7BQ6UX53 244 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 GCNT7Q6ZNI0 430 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 AKAP14Q86UN6 197 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 TMEM161BQ8NDZ6 487 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 KLHL31Q9H511 634 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 AP3M1Q9Y2T2 418 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 CCDC182A6NF36 153 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 TMCC2O75069 709 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 SLC26A2P50443 739 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 PRKG2Q13237 762 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 ZACNQ401N2 412 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 ARSHQ5FYA8 562 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 MFSD14CQ5VZR4 134 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 ZNF614Q8N883 585 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 HTRA1Q92743 480 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 MRPL57Q9BQC6 102 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 EBF3Q9H4W6 596 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 LGALS13Q9UHV8 139 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 FMN2Q9NZ56 1722 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 RPTORQ8N122 1335 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 WTIPA6NIX2 430 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 MATN2O00339 956 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 TPD52L2O43399 206 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 ZC3H12AQ5D1E8 599 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 DSELQ8IZU8 1212 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 MCFD2Q8NI22 146 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 EPB41L4BQ9H329 900 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 VAV3Q9UKW4 847 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 NFAT5O94916 1531 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 PRR23AA6NEV1 266 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 RGL2O15211 777 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 NRP2O60462 931 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 PPP2R1BP30154 601 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 ILF2Q12905 390 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CAMK2GQ13555 558 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 SCIMPQ6UWF3 145 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 PAGE2Q7Z2X7 111 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 LGMNQ99538 433 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 PIDD1Q9HB75 910 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 MYOZ2Q9NPC6 264 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 DDX4Q9NQI0 724 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 BTRCQ9Y297 605 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 MEIS2O14770 477 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 STAU1O95793 577 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CCNFP41002 786 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 RAB10P61026 200 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CNPY1Q3B7I2 92 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CACTIN-AS1Q8N1I8 211 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 GSTK1Q9Y2Q3 226 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CLUHO75153 1309 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 TRAFD1O14545 582 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 RHOCP08134 193 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 CNPP09543 421 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 SPATA31C1P0DKV0 1188 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 RXRGP48443 463 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 KREMEN1Q96MU8 473 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 KLQ9UEF7 1012 aa19.72■□□□□ 0.75
CCDC88B-202ENST00000356786 NTRK1P04629 796 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 PABPC1P11940 636 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 ZNF7P17097 686 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 PAICSP22234 425 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 LDLRAP1Q5SW96 308 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 TRIM74Q86UV6 250 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 TRIM73Q86UV7 250 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 DHX33Q9H6R0 707 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 KRCC1Q9NPI7 259 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 DKK3Q9UBP4 350 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 VPS28Q9UK41 221 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 AGRPO00253 132 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 IL1R1P14778 569 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 NFKB1P19838 968 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 CRHR1P34998 444 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 AQP4P55087 323 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 GSCP56915 257 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 ALFQ53S48 1182 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 FBXO16Q8IX29 292 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 OFCC1Q8IZS5 231 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 RDH11Q8TC12 318 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 FAM84AQ96KN4 292 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 MORF4L1Q9UBU8 362 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 PRKAG3Q9UGI9 489 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 GTF2A1LQ9UNN4 478 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 CYP3A7-CYP3A51PA0A087WV96 503 aa19.71■□□□□ 0.75
CCDC88B-202ENST00000356786 TFECO14948 347 aaPredicted RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms