RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 USP33Q8TEY7 942 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CLEC4CQ8WTT0 213 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 IRGQQ8WZA9 623 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CPT1BQ92523 772 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 P3H4Q92791 437 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 NTAN1Q96AB6 310 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 HAUS1Q96CS2 278 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 PGAP3Q96FM1 320 aaPredicted RBP8.42□□□□□ -1.06
CD44-205ENST00000352818 SMARCD1Q96GM5 515 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 RBM15Q96T37 977 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-205ENST00000352818 NPY6RQ99463 290 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 PKMYT1Q99640 499 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 ACBD6Q9BR61 282 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CCDC77Q9BR77 488 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 TRIM62Q9BVG3 475 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 RAB6CQ9H0N0 254 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 SMG9Q9H0W8 520 aaKnown RBP8.42□□□□□ -1.06
CD44-205ENST00000352818 CENPHQ9H3R5 247 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 EBF3Q9H4W6 596 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CCDC134Q9H6E4 229 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CRTAC1Q9NQ79 661 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 GKN1Q9NS71 199 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 KRT82Q9NSB4 513 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 TMEM51Q9NW97 253 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 EURLQ9NYK6 297 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 CALCOCO1Q9P1Z2 691 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 PAK5Q9P286 719 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 STAP1Q9ULZ2 295 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 AP4E1Q9UPM8 1137 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 BTBD3Q9Y2F9 522 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 USP3Q9Y6I4 520 aa8.42□□□□□ -1.06
CD44-205ENST00000352818 GOLGA8CPA6NN73 597 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 HHLA1C9JL84 531 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 E7EVH7 732 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ATP2C2O75185 946 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 CDH16O75309 829 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 AP1G2O75843 785 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ACSL3O95573 720 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ZSCAN5DPP0CG00 497 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ETS1P14921 441 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 CYP2F1P24903 491 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 HPDP32754 393 aaPredicted RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 RPL22P35268 128 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 SULT1E1P49888 294 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ATP1A2P50993 1020 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 GDF10P55107 478 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 DAOAP59103 153 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 YWHAZP63104 245 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 NR1H3Q13133 447 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 MMRN1Q13201 1228 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 RUNX3Q13761 415 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 MAPRE1Q15691 268 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 HIF1AQ16665 826 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 CA9Q16790 459 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 FBXO43Q4G163 708 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 C2orf27AQ580R0 203 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ZC3H12AQ5D1E8 599 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 DNAJC21Q5F1R6 531 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 INTS6LQ5JSJ4 861 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 ARHGAP40Q5TG30 622 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 SCYL2Q6P3W7 929 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 FAM171BQ6P995 826 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 DHRS13Q6UX07 377 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 PPP1R21Q6ZMI0 780 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 BZW1Q7L1Q6 419 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 METTL23Q86XA0 190 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 UNC45BQ8IWX7 931 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 DEFB106AQ8N104 65 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 PCDH19Q8TAB3 1148 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 BPIFB1Q8TDL5 484 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 EPS8L3Q8TE67 593 aaKnown RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 ACDQ96AP0 544 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 NXPE2Q96DL1 559 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 PCED1BQ96HM7 432 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 SUSD3Q96L08 255 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 QKIQ96PU8 341 aaKnown RBP eCLIP8.41□□□□□ -1.06
CD44-205ENST00000352818 KCTD15Q96SI1 283 aaPredicted RBP8.41□□□□□ -1.06
CD44-205ENST00000352818 SMOQ99835 787 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 P2RY13Q9BPV8 354 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 MED10Q9BTT4 135 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 EPN3Q9H201 632 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 USP29Q9HBJ7 922 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 POPDC2Q9HBU9 364 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 LRRC4Q9HBW1 653 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 LRRC4CQ9HCJ2 640 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ASAH2Q9NR71 780 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 OBP2AQ9NY56 170 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 BCCIPQ9P287 314 aaKnown RBP eCLIP8.41□□□□□ -1.06
CD44-205ENST00000352818 FZD10Q9ULW2 581 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 MAN2B2Q9Y2E5 1009 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 RAD54BQ9Y620 910 aa8.41□□□□□ -1.06
CD44-205ENST00000352818 ERICH4A6NGS2 130 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 H3BRJ5 948 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 H7C0C1 242 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 CLDN5O00501 218 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 BEST1O76090 585 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 IFNB1P01574 187 aa8.4□□□□□ -1.06
CD44-205ENST00000352818 TFE3P19532 575 aaPredicted RBP8.4□□□□□ -1.06
CD44-205ENST00000352818 ACAT1P24752 427 aaKnown RBP8.4□□□□□ -1.06
CD44-205ENST00000352818 GJA4P35212 333 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms