RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 DDTLA6NHG4 134 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 EBAG9O00559 213 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 PPEF2O14830 753 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 MOSPD3O75425 235 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 RTN3O95197 1032 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 EPN2O95208 641 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 CD4P01730 458 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 CDK4P11802 303 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ENO3P13929 434 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 PTPN2P17706 415 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ABCD1P33897 745 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 RASSF2P50749 326 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 SLC18A2Q05940 514 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 LAMB3Q13751 1172 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 RABEP1Q15276 862 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ETFDHQ16134 617 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF667Q5HYK9 610 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 Q5PR19 223 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 SERTAD4-AS1Q5TG53 156 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ATG9BQ674R7 924 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 HEPHL1Q6MZM0 1159 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 C11orf87Q6NUJ2 197 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 TMED8Q6PL24 325 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 PARM1Q6UWI2 310 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 FAM83HQ6ZRV2 1179 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 MAATS1Q7Z4T9 603 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 FAM160B2Q86V87 743 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 GPSM1Q86YR5 675 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 PLD5Q8N7P1 536 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 LPAR1Q92633 364 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ATOH1Q92858 354 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 SAAL1Q96ER3 474 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 C1QTNF7Q9BXJ2 289 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 SPRTNQ9H040 489 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 TTYH1Q9H313 450 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 BABAM1Q9NWV8 329 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 PLEKHB1Q9UF11 243 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 SARDHQ9UL12 918 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 KAT6BQ8WYB5 2073 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 EVPLQ92817 2033 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 RIMBP3CA6NJZ7 1639 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 RIMBP3BA6NNM3 1639 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 RIMBP3Q9UFD9 1639 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 KDM3AQ9Y4C1 1321 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 IGLV5-39A0A0G2JS06 123 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM272A0A1B0GTI8 110 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 A0A1W2PPH5 198 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 CBY3A6NI87 242 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TTC36A6NLP5 189 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 F5H0A9 414 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 HSPB6O14558 160 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SPTLC2O15270 562 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TNFSF14O43557 240 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 NDUFB8O95169 186 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SYF2O95926 243 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TBX18O95935 607 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 PCNAP12004 261 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SLC2A4P14672 509 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF8P17098 575 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 CTPS1P17812 591 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TNFAIP3P21580 790 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 POU1F1P28069 291 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 EPHA8P29322 1005 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 FMO4P31512 558 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 AVPR1AP37288 418 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 EIF3BP55884 814 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TAF11Q15544 211 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 MAPRE1Q15691 268 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 R3HCC1LQ7Z5L2 792 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 C1QL2Q7Z5L3 287 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 HORMAD2Q8N7B1 307 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 MCPH1Q8NEM0 835 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM163Q8TC26 289 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 VOPP1Q96AW1 172 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 KLHL29Q96CT2 875 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 RNF183Q96D59 192 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 NLRP4Q96MN2 994 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 NR1H4Q96RI1 486 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 MPHOSPH8Q99549 860 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 WDR77Q9BQA1 342 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SLC29A3Q9BZD2 475 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SLC25A18Q9H1K4 315 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 KLHL31Q9H511 634 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 WDR6Q9NNW5 1121 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SNTG1Q9NSN8 517 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 SPATS2LQ9NUQ6 558 aaKnown RBP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 POT1Q9NUX5 634 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 ELOVL5Q9NYP7 299 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 HSPB7Q9UBY9 170 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 CAMK2AQ9UQM7 478 aa3.55□□□□□ -1.84
HMGB1-201ENST00000326004 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.55□□□□□ -1.84
HMGB1-201ENST00000326004 ADGRF5Q8IZF2 1346 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 A0A087X0M5 115 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 A0A1B0GX30 115 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 A0A1W2PQM1 296 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 STMND1H3BQB6 276 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TAF4O00268 1085 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TACC1O75410 805 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 CLDN7O95471 211 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 GALTP07902 379 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms