RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SOCS4Q8WXH5 440 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ACOX2Q99424 681 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ELOVL6Q9H5J4 265 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 REEP1Q9H902 201 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 AAASQ9NRG9 546 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 VPS45Q9NRW7 570 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ETNK2Q9NVF9 386 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ADPRHL2Q9NX46 363 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 TRPM5Q9NZQ8 1165 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ADAM28Q9UKQ2 775 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ING4Q9UNL4 249 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RAP2CQ9Y3L5 183 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 C5orf60A6NFR6 353 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 HACD1B0YJ81 288 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RBAK-RBAKDNI3L0D1 243 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 AMPD1P23109 780 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RBL1P28749 1068 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 HIRAP54198 1017 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 FMO1Q01740 532 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 CES3Q6UWW8 571 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 FAM43BQ6ZT52 329 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 PLPPR4Q7Z2D5 763 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SMARCD1Q96GM5 515 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 TBC1D13Q9NVG8 400 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 KANSL3Q9P2N6 904 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SLC12A4Q9UP95 1085 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 GSTK1Q9Y2Q3 226 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 MGAT4DA6NG13 374 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SIGLEC16A6NMB1 481 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 CYP1A1P04798 512 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 ITGAVP06756 1048 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ALOX15P16050 662 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 RPL22P35268 128 aaKnown RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 GABRB2P47870 512 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 CCNG1P51959 295 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 TUBA4AP68366 448 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 UGCGQ16739 394 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 PTAR1Q7Z6K3 402 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 UXS1Q8NBZ7 420 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 B3GALNT2Q8NCR0 500 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ZNF540Q8NDQ6 660 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 OR56A4Q8NGH8 313 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 FBXO30Q8TB52 745 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 BHMTQ93088 406 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ZFP42Q96MM3 310 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 PWWP2AQ96N64 755 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 C8orf4Q9NR00 106 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 UBP1Q9NZI7 540 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 COQ6Q9Y2Z9 468 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 NID2Q14112 1375 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ADAMTSL3P82987 1691 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 A0A087X1B8 175 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TPH1P17752 444 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 KDELR1P24390 212 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 OXCT1P55809 520 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CDC16Q13042 620 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 FSCN1Q16658 493 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 ZNF284Q2VY69 593 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ZFP69Q49AA0 526 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 KRT74Q7RTS7 529 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 C12orf56Q8IXR9 622 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 DPP10Q8N608 796 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MYDGFQ969H8 173 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MARK4Q96L34 752 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TINF2Q9BSI4 451 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CCNB1IP1Q9NPC3 277 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 RBM22Q9NW64 420 aaKnown RBP eCLIP11.62□□□□□ -0.556e-8■■■■■ 33.4
VPS39-201ENST00000318006 ZNF221Q9UK13 617 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 GMPPBQ9Y5P6 360 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CACNA1FO60840 1977 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TGDSO95455 350 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ASS1P00966 412 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 CALCAP01258 141 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ALDH2P05091 517 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ITGA2BP08514 1039 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 USP39Q53GS9 565 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 ZNF470Q6ECI4 717 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 DNAJC14Q6Y2X3 702 aaPredicted RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 UTS2BQ765I0 119 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 SAPCD2Q86UD0 394 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 UNC93AQ86WB7 457 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TMEM132CQ8N3T6 1108 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MCFD2Q8NI22 146 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MRPL48Q96GC5 212 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 APBA2Q99767 749 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ACO2Q99798 780 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 ACTR8Q9H981 624 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 PTPRHQ9HD43 1115 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 PIH1D1Q9NWS0 290 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 SLC17A7Q9P2U7 560 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TRHDEQ9UKU6 1024 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CARD8Q9Y2G2 431 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TRIM17Q9Y577 477 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 GRIN2DO15399 1336 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 PSMA3P25788 255 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 DGKZQ13574 1117 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 SPESP1Q6UW49 350 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CACTIN-AS1Q8N1I8 211 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 KRT78Q8N1N4 520 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 LRRC17Q8N6Y2 441 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms