RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 NANOGNBQ7Z5D8 188 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF410Q86VK4 478 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 EPHX4Q8IUS5 362 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 KRT78Q8N1N4 520 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 KLHL23Q8NBE8 558 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 CPT1BQ92523 772 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 OSMRQ99650 979 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 NPAS2Q99743 824 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TUT1Q9H6E5 874 aaKnown RBP12.98□□□□□ -0.33
COL3A1-201ENST00000304636 CCNB1IP1Q9NPC3 277 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 PTTG2Q9NZH5 202 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 VAV3Q9UKW4 847 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 PRR23AA6NEV1 266 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 H3BN98 237 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 SNPHO15079 494 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 HGFP14210 728 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 IDO1P14902 403 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TPSB2P20231 275 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 MMP8P22894 467 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 SLC7A2P52569 658 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TPSAB1Q15661 275 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 MTX3Q5HYI7 312 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 FNBP1LQ5T0N5 605 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 OLFML1Q6UWY5 402 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF621Q6ZSS3 439 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TBC1D21Q8IYX1 336 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 STK40Q8N2I9 435 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 CDK5RAP1Q96SZ6 601 aaKnown RBP12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TLR8Q9NR97 1041 aaKnown RBP12.98□□□□□ -0.33
COL3A1-201ENST00000304636 LNPEPQ9UIQ6 1025 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 TBC1D30Q9Y2I9 924 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 BCL9O00512 1426 aa12.98□□□□□ -0.33
COL3A1-201ENST00000304636 CST1P01037 141 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 AXLP30530 894 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 CDC42P60953 191 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF549Q6P9A3 640 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 C15orf52Q6ZUT6 534 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 DSELQ8IZU8 1212 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 CLYBLQ8N0X4 340 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 TSEN34Q9BSV6 310 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 PRDM12Q9H4Q4 367 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 NOL11Q9H8H0 719 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ABCB1P08183 1280 aaPredicted RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 NDUFA5Q16718 116 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 GNASQ5JWF2 1037 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 RNASEH2BQ5TBB1 312 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 LHX5Q9H2C1 402 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 H0YC42 278 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 NRP2O60462 931 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 CETPP11597 493 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 NELFEP18615 380 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 FSCN1Q16658 493 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ZNF284Q2VY69 593 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ARHGAP36Q6ZRI8 547 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 HERC6Q8IVU3 1022 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 PGAM4Q8N0Y7 254 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ST13P5Q8NFI4 369 aaPredicted RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ULBP1Q9BZM6 244 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 POLR1EQ9GZS1 481 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 AHSPQ9NZD4 102 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 TNFSF13BQ9Y275 285 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 FOXO6A8MYZ6 492 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 HOXB6P17509 224 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 CYP2B6P20813 491 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 HIRAP54198 1017 aaPredicted RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 FKBP1AP62942 108 aaKnown RBP12.97□□□□□ -0.33
COL3A1-201ENST00000304636 GRIK4Q16099 956 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 CYP1B1Q16678 543 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 KLHL12Q53G59 568 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 DPP10Q8N608 796 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 OR5B17Q8NGF7 314 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 COX4I2Q96KJ9 171 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 TRMOQ9BU70 441 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 GSTK1Q9Y2Q3 226 aa12.97□□□□□ -0.33
COL3A1-201ENST00000304636 ITGB6P18564 788 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 SLC26A3P40879 764 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 LSM3P62310 102 aaKnown RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 TRAP1Q12931 704 aaKnown RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 PRKG2Q13237 762 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 MAPKAPK3Q16644 382 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 STXBP5Q5T5C0 1151 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 MON1BQ7L1V2 547 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 PPP3R2Q96LZ3 170 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 OSBPL6Q9BZF3 934 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 KLHL28Q9NXS3 571 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 FETUBQ9UGM5 382 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 FADS3Q9Y5Q0 445 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 IL6P05231 212 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 AKAP5P24588 427 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 IL12AP29459 219 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 ASTE1Q2TB18 679 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 CTXN3Q4LDR2 81 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 C6orf52Q5T4I8 152 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 VSIG10LQ86VR7 867 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 FAM126AQ9BYI3 521 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 EBF2Q9HAK2 575 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 STXBP5LQ9Y2K9 1186 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 AZIN1O14977 448 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 TCEA3O75764 348 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms