RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SIRPGQ9P1W8 387 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 KLHL8Q9P2G9 620 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 IGSF9Q9P2J2 1179 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ARHGAP42A6NI28 874 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 ERI2A8K979 691 aaKnown RBP17.06■□□□□ 0.32
CPSF4-201ENST00000292476 PSMD3O43242 534 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 CCDC22O60826 627 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 PIAS1O75925 651 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 METTL18O95568 372 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 NEFHP12036 1026 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 HOXA9P31269 272 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 CRHR1P34998 444 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 IRS1P35568 1242 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 YBEYP58557 167 aaPredicted RBP17.06■□□□□ 0.32
CPSF4-201ENST00000292476 MTM1Q13496 603 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 C5orf22Q49AR2 442 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 TEX44Q53QW1 395 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 AFMIDQ63HM1 303 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 FBXL22Q6P050 247 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 MARK2Q7KZI7 788 aaKnown RBP17.06■□□□□ 0.32
CPSF4-201ENST00000292476 C14orf80Q86SX3 495 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 LEMD2Q8NC56 503 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 TTC17Q96AE7 1141 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 KLF16Q9BXK1 252 aaPredicted RBP17.06■□□□□ 0.32
CPSF4-201ENST00000292476 LMAN2LQ9H0V9 348 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 RNPEPL1Q9HAU8 725 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 MOCS1Q9NZB8 636 aa17.06■□□□□ 0.32
CPSF4-201ENST00000292476 SOBPA7XYQ1 873 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 A8MUI8 341 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 CXorf49A8MYA2 514 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 AP3B1O00203 1094 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 DFFAO00273 331 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 HGSO14964 777 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 SPATA31D3P0C874 917 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 MBL2P11226 248 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 BGNP21810 368 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 CLCN4P51793 760 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 WASHC5Q12768 1159 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 PRPSAP1Q14558 356 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 PARP15Q460N3 678 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 FAXCQ5TGI0 409 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 KYAT3Q6YP21 454 aaKnown RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 SPATA31D4Q6ZUB0 917 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 ENDOVQ8N8Q3 282 aaKnown RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 FAM13CQ8NE31 585 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 PTCD3Q96EY7 689 aaKnown RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 SIKE1Q9BRV8 207 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 TMEM120AQ9BXJ8 343 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 MMADHCQ9H3L0 296 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-201ENST00000292476 KCNK13Q9HB14 408 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 ASAH2Q9NR71 780 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 HEY2Q9UBP5 337 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF510Q9Y2H8 683 aa17.05■□□□□ 0.32
CPSF4-201ENST00000292476 MATN3O15232 486 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 STC2O76061 302 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 OLFM2O95897 454 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 HDCP19113 662 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 CALB2P22676 271 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 PTPN3P26045 913 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 DDX6P26196 483 aaKnown RBP eCLIP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 GABRR2P28476 465 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 KCNQ1P51787 676 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 TCEAL5Q5H9L2 206 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 LRRC8BQ6P9F7 803 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 LONP2Q86WA8 852 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 ARHGAP12Q8IWW6 846 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF567Q8N184 647 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 CCDC33Q8N5R6 958 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 NSMCE1Q8WV22 266 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 NSL1Q96IY1 281 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 CELF6Q96J87 481 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 SLC39A8Q9C0K1 460 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 IL21Q9HBE4 155 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 SMYD2Q9NRG4 433 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 GEMIN8Q9NWZ8 242 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 MPP6Q9NZW5 540 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 ZMYM5Q9UJ78 669 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 DCTN4Q9UJW0 460 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 A0A0G2JND7 137 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 HIDE1A8MVS5 230 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 NEBLO76041 1014 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 CBX6O95503 412 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 HNRNPA1P09651 372 aaKnown RBP eCLIP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 CORO1AP31146 461 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 OVGP1Q12889 678 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 ADGRF1Q5T601 910 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 TMEM150AQ86TG1 271 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 RNF38Q9H0F5 515 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 C12orf65Q9H3J6 166 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 NSUN3Q9H649 340 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 TRPC7Q9HCX4 862 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF334Q9HCZ1 680 aaPredicted RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 STOML2Q9UJZ1 356 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 LSM7Q9UK45 103 aaKnown RBP17.04■□□□□ 0.32
CPSF4-201ENST00000292476 L3MBTL1Q9Y468 752 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 MAD1L1Q9Y6D9 718 aa17.04■□□□□ 0.32
CPSF4-201ENST00000292476 UNC80Q8N2C7 3258 aa17.03■□□□□ 0.32
CPSF4-201ENST00000292476 TRAV19A0A0A6YYK7 116 aa17.03■□□□□ 0.32
CPSF4-201ENST00000292476 TYW5A2RUC4 315 aaKnown RBP17.03■□□□□ 0.32
CPSF4-201ENST00000292476 C2orf78A6NCI8 922 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms