RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TYW3Q6IPR3 259 aaKnown RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 TRAPPC5Q8IUR0 188 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ACMSDQ8TDX5 336 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 FIG4Q92562 907 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ZFRQ96KR1 1074 aaKnown RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 UBIAD1Q9Y5Z9 338 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 MYL12BO14950 172 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 SPTLC1O15269 473 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 ITGA2P17301 1181 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 LBPP18428 481 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 RGS1Q08116 209 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 COX10Q12887 443 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 NEPROQ6NW34 567 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 TRIM8Q9BZR9 551 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 SMIM10L2AP0DMW4 78 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 SMIM10L2BP0DMW5 78 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 AMD1P17707 334 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 PBX1P40424 430 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 SLC44A4Q53GD3 710 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 IKBIPQ70UQ0 350 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 ART4Q93070 314 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 PRDM8Q9NQV8 689 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 INPP4BO15327 924 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 NUDT17P0C025 328 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 BIKQ13323 160 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 OR6Y1Q8NGX8 325 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 GEMIN8Q9NWZ8 242 aaKnown RBP19.34■□□□□ 0.69
UPF1-201ENST00000262803 MORF4L1Q9UBU8 362 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 VAV3Q9UKW4 847 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 MRPS23Q9Y3D9 190 aaKnown RBP19.34■□□□□ 0.69
UPF1-201ENST00000262803 PCDHGA4Q9Y5G9 962 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 COX7A2P14406 83 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 DDR1Q08345 913 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 BRMS1LQ5PSV4 323 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 ADHFE1Q8IWW8 467 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 ZNF670Q9BS34 389 aa19.34■□□□□ 0.69
UPF1-201ENST00000262803 A0A0B4J269 797 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 ADM5C9JUS6 153 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 USP17L7P0C7H9 530 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 RPL22P35268 128 aaKnown RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 NPNTQ6UXI9 565 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 R3HCC1LQ7Z5L2 792 aaKnown RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 ALLCQ8N6M5 410 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 ANGPT4Q9Y264 503 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 RNF225M0QZC1 329 aaPredicted RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 ACSL4O60488 711 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 MED26O95402 600 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 NUDT14O95848 222 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 TRUB2O95900 331 aaKnown RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 ADH1CP00326 375 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 FEN1P39748 380 aaKnown RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 PLK1P53350 603 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 ATP6V0D1P61421 351 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 VGLL4Q14135 290 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 INO80DQ53TQ3 878 aaPredicted RBP19.33■□□□□ 0.69
UPF1-201ENST00000262803 GAD1Q99259 594 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 POMKQ9H5K3 350 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 CCDC167Q9P0B6 97 aa19.33■□□□□ 0.69
UPF1-201ENST00000262803 HTR7P34969 479 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 IRF8Q02556 426 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 BEND7Q8N7W2 519 aaPredicted RBP19.33■□□□□ 0.68
UPF1-201ENST00000262803 ANKRD52Q8NB46 1076 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 ZNF248Q8NDW4 579 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 OR52L1Q8NGH7 329 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 HSD17B14Q9BPX1 270 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 PTPRHQ9HD43 1115 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.33■□□□□ 0.68
UPF1-201ENST00000262803 PIGNO95427 931 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 EVX2Q03828 476 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 UTP15Q8TED0 518 aaKnown RBP19.33■□□□□ 0.68
UPF1-201ENST00000262803 OR12D3Q9UGF7 316 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 SLC27A6Q9Y2P4 619 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 PCDHA11Q9Y5I1 949 aa19.33■□□□□ 0.68
UPF1-201ENST00000262803 PHGDHO43175 533 aaKnown RBP19.32■□□□□ 0.68
UPF1-201ENST00000262803 SPATA31C1P0DKV0 1188 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 PPIBP23284 216 aaKnown RBP19.32■□□□□ 0.68
UPF1-201ENST00000262803 CTNNB1P35222 781 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 STAT5AP42229 794 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 RPL14P50914 215 aaKnown RBP19.32■□□□□ 0.68
UPF1-201ENST00000262803 TAF13Q15543 124 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 OTUD3Q5T2D3 398 aaPredicted RBP19.32■□□□□ 0.68
UPF1-201ENST00000262803 TRIQKQ629K1 86 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 PMF1Q6P1K2 205 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 VN1R5Q7Z5H4 357 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 ZNF605Q86T29 641 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 PGLYRP2Q96PD5 576 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 PIPSLA2A3N6 862 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 TPP1O14773 563 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 PDE9AO76083 593 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 FMO4P31512 558 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 FUT2Q10981 343 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 RGMBQ6NW40 437 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 POLNQ7Z5Q5 900 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 IRF2BP1Q8IU81 584 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 INTS7Q9NVH2 962 aaKnown RBP19.32■□□□□ 0.68
UPF1-201ENST00000262803 MGRN1O60291 552 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 ABHD2P08910 425 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 CYP2R1Q6VVX0 501 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 KRT77Q7Z794 578 aa19.32■□□□□ 0.68
UPF1-201ENST00000262803 ADAMTSL2Q86TH1 951 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms