RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ERAP2Q6P179 960 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ARFGAP1Q8N6T3 406 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 NAT16Q8N8M0 369 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 APOPT1Q96IL0 206 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FCRL5Q96RD9 977 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 HERPUD2Q9BSE4 406 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 WWP1Q9H0M0 922 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 GPAMQ9HCL2 828 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ANKRD65E5RJM6 399 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 GMNNO75496 209 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MPOP05164 745 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 PIRTP0C851 137 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CNGA3Q16281 694 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 ANKRD20A4Q4UJ75 823 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 C14orf80Q86SX3 495 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 SETD3Q86TU7 594 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 KLHL29Q96CT2 875 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 SGF29Q96ES7 293 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 LRRC37BQ96QE4 947 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 RAB3IPQ96QF0 476 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 DEC1Q9P2X7 70 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CHKBQ9Y259 395 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MFHAS1Q9Y4C4 1052 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 USP15Q9Y4E8 981 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 A0A096LPK6 155 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 TCRBV5S1A1TA0A578 114 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 BUD23O43709 281 aaKnown RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 PIAS1O75925 651 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MT-CYBP00156 380 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 HIST1H2AGP0C0S8 130 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 HIST1H2ADP20671 130 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CSE1LP55060 971 aaKnown RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 UBE3AQ05086 875 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 SFSWAPQ12872 951 aaKnown RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 SYTL3Q4VX76 610 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 RASIP1Q5U651 963 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 PKN3Q6P5Z2 889 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 LINGO4Q6UY18 593 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 SLC22A17Q8WUG5 538 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 HIST1H2AHQ96KK5 128 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MAGEB18Q96M61 343 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF599Q96NL3 588 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CYP2S1Q96SQ9 504 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 HIST1H2AJQ99878 128 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 H2AFJQ9BTM1 129 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 TMEM109Q9BVC6 243 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 RUVBL2Q9Y230 463 aaKnown RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CAPN7Q9Y6W3 813 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CITO14578 2027 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 OTOFQ9HC10 1997 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 PER2O15055 1255 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MEFVO15553 781 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CYP2A6P11509 494 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 MCCD1P59942 119 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 TSNAXIP1Q2TAA8 658 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 TCP10LQ8TDR4 215 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 CLSTN3Q9BQT9 956 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 EML4Q9HC35 981 aaKnown RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 ABCF3Q9NUQ8 709 aa11.73□□□□□ -0.53
VPS4A-201ENST00000254950 ARIH1Q9Y4X5 557 aaPredicted RBP11.73□□□□□ -0.53
VPS4A-201ENST00000254950 LPOP22079 712 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 CRABP2P29373 138 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 GALNT3Q14435 633 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 RFTN1Q14699 578 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 MMEL1Q495T6 779 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 SERPINA13PQ6UXR4 307 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 LRRC34Q8IZ02 419 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 GRIN3AQ8TCU5 1115 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 TMEM248Q9NWD8 314 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 FBXO5Q9UKT4 447 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 STK38LQ9Y2H1 464 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 CNTN5O94779 1100 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ESRRAP11474 423 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ABL2P42684 1182 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 SKOR1P84550 965 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 SLC20A2Q08357 652 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 FSCBQ5H9T9 825 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 RTP3Q9BQQ7 232 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 WDR6Q9NNW5 1121 aaKnown RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 CATSPERZQ9NTU4 200 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 TDP1Q9NUW8 608 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 SUPT3HB4E1H0 165 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 DCLK1O15075 740 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 TGM5O43548 720 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 SUPT3HO75486 399 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 RBP1P09455 135 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF7P17097 686 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 GLRBP48167 497 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 LIG3P49916 1009 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 MNAT1P51948 309 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 DPYSQ14117 519 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 GRASPQ7Z6J2 395 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 AGR3Q8TD06 166 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ACDQ96AP0 544 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 FOPNLQ96NB1 174 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ACTR5Q9H9F9 607 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-201ENST00000254950 NPHS2Q9NP85 383 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 DUS2Q9NX74 493 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms