RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RABGGTBP53611 331 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ZNF829Q3KNS6 432 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 USP41Q3LFD5 358 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 METTL21CQ5VZV1 264 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 DHFR2Q86XF0 187 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 SEPHS2Q99611 448 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 DGCR6LQ9BY27 220 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 MRPL4Q9BYD3 311 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 LHX5Q9H2C1 402 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ADNPQ9H2P0 1102 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 TNFRSF12AQ9NP84 129 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 LTB4R2Q9NPC1 389 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 DOCK5Q9H7D0 1870 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 OGTO15294 1046 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 E2F6O75461 281 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 ATP6V1B2P21281 511 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 MLLT10P55197 1068 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 DMPKQ09013 629 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 SPIDRQ14159 915 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 RGS21Q2M5E4 152 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 FUT11Q495W5 492 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 REP15Q6BDI9 236 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 JADE1Q6IE81 842 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 PDZD8Q8NEN9 1154 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 USP33Q8TEY7 942 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 NXNL1Q96CM4 212 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 KLHL25Q9H0H3 589 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 VPS33BQ9H267 617 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 MRPL46Q9H2W6 279 aaKnown RBP14.54□□□□□ -0.08
SDC1-201ENST00000254351 SLC38A10Q9HBR0 1119 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 CHST12Q9NRB3 414 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 SPATA7Q9P0W8 599 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 PTGDR2Q9Y5Y4 395 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 EI24O14681 340 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 SUPT20HL2P0C7V6 817 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 ALDH4A1P30038 563 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 LRPAP1P30533 357 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 GJA9P57773 515 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 PITX1P78337 314 aaPredicted RBP14.54□□□□□ -0.08
SDC1-201ENST00000254351 SEMA5AQ13591 1074 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 SUPT20HL1Q3ZLR7 823 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 DENND6AQ8IWF6 608 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 SULF1Q8IWU6 871 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 Q8N9G6 341 aaPredicted RBP14.54□□□□□ -0.08
SDC1-201ENST00000254351 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.54□□□□□ -0.08
SDC1-201ENST00000254351 CASP10Q92851 521 aa14.54□□□□□ -0.08
SDC1-201ENST00000254351 TMA7Q9Y2S6 64 aaKnown RBP14.54□□□□□ -0.08
SDC1-201ENST00000254351 TRIP11Q15643 1979 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 A0A0A0MRY4 1105 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 YDJCA8MPS7 323 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 MRASO14807 208 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 TPSB2P20231 275 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 OXTRP30559 389 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 POLR2IP36954 125 aaKnown RBP14.53□□□□□ -0.08
SDC1-201ENST00000254351 TPSAB1Q15661 275 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 GEN1Q17RS7 908 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 ANKRD26P1Q6NSI1 321 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 SLC2A7Q6PXP3 512 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 TMEM110Q86TL2 294 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 ZNF567Q8N184 647 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 CXorf38Q8TB03 319 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 TFAP2CQ92754 450 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 SPATA13Q96N96 652 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 CPNE1Q99829 537 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 PRDM12Q9H4Q4 367 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 FANCEQ9HB96 536 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 CACNA2D2Q9NY47 1150 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 GINS2Q9Y248 185 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 DLX3O60479 287 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 MSCO60682 206 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 ALDH1A2O94788 518 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 MAGP20916 626 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 IREB2P48200 963 aaKnown RBP14.53□□□□□ -0.08
SDC1-201ENST00000254351 FKBP1AP62942 108 aaKnown RBP14.53□□□□□ -0.08
SDC1-201ENST00000254351 KIF19Q2TAC6 998 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 PRAMEF18Q5VWM3 479 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 NCBP2-AS2Q69YL0 99 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 CNSTQ6PJW8 725 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 KCNMB4Q86W47 210 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 LSMEM2Q8N112 164 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 PBXIP1Q96AQ6 731 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 PPP1R14BQ96C90 147 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 GID8Q9NWU2 228 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 EVLQ9UI08 416 aaPredicted RBP14.53□□□□□ -0.08
SDC1-201ENST00000254351 VANGL2Q9ULK5 521 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 SQORQ9Y6N5 450 aa14.53□□□□□ -0.08
SDC1-201ENST00000254351 LACTBL1A8MY62 500 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 AGRPO00253 132 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 TADA2AO75478 443 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 ARL2P36404 184 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 C1QTNF8P60827 252 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 CNTN2Q02246 1040 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 MERTKQ12866 999 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 FBXO48Q5FWF7 155 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 GRTP1Q5TC63 336 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 LIPMQ5VYY2 423 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 RTP4Q96DX8 246 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 HPDLQ96IR7 371 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 EFHD1Q9BUP0 239 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 FTHL17Q9BXU8 183 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms