RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 AP4B1Q9Y6B7 739 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TMCC1O94876 653 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GLP2RO95838 553 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ITGAXP20702 1163 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 YWHAQP27348 245 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MAXP61244 160 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 KCNJ11Q14654 390 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MAPRE1Q15691 268 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 METTL6Q8TCB7 284 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FIZ1Q96SL8 496 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MINDY3Q9H8M7 445 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GLOD4Q9HC38 313 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CHCHD3Q9NX63 227 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 COPG2Q9UBF2 871 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ABL2P42684 1182 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CCNG1P51959 295 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NUP107P57740 925 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TRAF2Q12933 501 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 KLF1Q13351 362 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SLC25A52Q3SY17 297 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RAB6CQ53S08 254 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 UNC93AQ86WB7 457 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ZDHHC17Q8IUH5 632 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CBR4Q8N4T8 237 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PQLC3Q8N755 202 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LPCAT1Q8NF37 534 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FBXO30Q8TB52 745 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LPGAT1Q92604 370 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC126Q96EE4 140 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ZFP42Q96MM3 310 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RAB6CQ9H0N0 254 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 COQ10BQ9H8M1 238 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 EXOSC4Q9NPD3 245 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TBC1D13Q9NVG8 400 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TRIP12Q14669 1992 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ADCY6O43306 1168 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SMIM10L2AP0DMW4 78 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SMIM10L2BP0DMW5 78 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NOVP48745 357 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 WNT7BP56706 349 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TAF2Q6P1X5 1199 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PRMT9Q6P2P2 845 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 EFL1Q7Z2Z2 1120 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MAGEE2Q8TD90 523 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GLMNQ92990 594 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 KLHL5Q96PQ7 755 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TRIM54Q9BYV2 358 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TMPRSS4Q9NRS4 437 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SIX4Q9UIU6 781 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NENFQ9UMX5 172 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ATRNL1Q5VV63 1379 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PHLPP1O60346 1717 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 C17orf102A2RUQ5 167 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NRP2O60462 931 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CRTAMO95727 393 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GUCA1CO95843 209 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LINC00032P0C843 101 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HSMCR30P0CW71 290 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PSMB9P28065 219 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LHX1P48742 406 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MRPS5P82675 430 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 IRF9Q00978 393 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ADGRE1Q14246 886 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ATP6AP1LQ52LC2 224 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HFE2Q6ZVN8 426 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TAS1R3Q7RTX0 852 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HERC6Q8IVU3 1022 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TMCO5AQ8N6Q1 288 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GPR152Q8TDT2 470 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FNIP1Q8TF40 1166 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PPM1MQ96MI6 270 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PRKD2Q9BZL6 878 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NXF3Q9H4D5 531 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RRN3Q9NYV6 651 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 STX16-NPEPL1H3BU86 382 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 BTN3A1O00481 513 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MSI1O43347 362 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TYROBPO43914 113 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 L1CAMP32004 1257 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CD86P42081 329 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RECQLP46063 649 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PCYT1AP49585 367 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NR1H2P55055 460 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ANKS6Q68DC2 871 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ESRP1Q6NXG1 681 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RALGPS2Q86X27 583 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MYO1HQ8N1T3 1032 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NIPA2Q8N8Q9 360 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RP9Q8TA86 221 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SYT11Q9BT88 431 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FZD8Q9H461 694 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MYOCOSA0A1B0GUC4 107 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NEMP2A6NFY4 417 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TK2O00142 265 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SCNN1BP51168 640 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 RAP1GDS1P52306 607 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 C21orf59P57076 290 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 UBE3AQ05086 875 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HDAC10Q969S8 669 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ERLEC1Q96DZ1 483 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms