RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 TBC1D4O60343 1298 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 NFKB1P19838 968 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 OTOP3Q7RTS5 596 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 OR52K1Q8NGK4 314 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 PRR11Q96HE9 360 aaPredicted RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 LRRC37BQ96QE4 947 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 SLC39A8Q9C0K1 460 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 HSFX1Q9UBD0 423 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 WASF2Q9Y6W5 498 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 FNDC1Q4ZHG4 1894 aaPredicted RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 PATJQ8NI35 1801 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 B3GALNT1O75752 331 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 INHBAP08476 426 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 HAPLN1P10915 354 aaPredicted RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 MX2P20592 715 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 CA4P22748 312 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 MAGEA3P43357 314 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ELAVL2Q12926 359 aaKnown RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 KPNB1Q14974 876 aaKnown RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 TAF1BQ53T94 588 aaPredicted RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 SPPL2BQ8TCT7 592 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 HDAC11Q96DB2 347 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 PAWRQ96IZ0 340 aaKnown RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 TMEM175Q9BSA9 504 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 FRMD8Q9BZ67 464 aaPredicted RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 VCXQ9H320 206 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 CWH43Q9H720 699 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 SLC17A6Q9P2U8 582 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 LNPEPQ9UIQ6 1025 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 PHTF1Q9UMS5 762 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 SLC12A8A0AV02 714 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 FAM47DPA6NHR8 397 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 H7C4K7 107 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 NCAM2O15394 837 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ASMTLO95671 621 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 APOEP02649 317 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ZCCHC18P0CG32 403 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ACRP10323 421 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ATF6P18850 670 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 DEFB103AP81534 67 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 PPP2R5DQ14738 602 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 TEX44Q53QW1 395 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 ARHGAP12Q8IWW6 846 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 DTX3LQ8TDB6 740 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 TUBGCP5Q96RT8 1024 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 DHRS4Q9BTZ2 278 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 XAB2Q9HCS7 855 aaKnown RBP11.7□□□□□ -0.54
CLN6-217ENST00000636964 MARCH2Q9P0N8 246 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 TBX21Q9UL17 535 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 TLR6Q9Y2C9 796 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 TBC1D30Q9Y2I9 924 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 STARD13Q9Y3M8 1113 aa11.7□□□□□ -0.54
CLN6-217ENST00000636964 C1QAP02745 245 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CSF2RAP15509 400 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CCNFP41002 786 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 MLLT6P55198 1093 aaPredicted RBP11.69□□□□□ -0.54
CLN6-217ENST00000636964 EIF2B5Q13144 721 aaKnown RBP11.69□□□□□ -0.54
CLN6-217ENST00000636964 COL19A1Q14993 1142 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 ARTNQ5T4W7 220 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 LRRC74BQ6ZQY2 392 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 ANKK1Q8NFD2 765 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SLC44A1Q8WWI5 657 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 AUTS2Q8WXX7 1259 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SPATA16Q9BXB7 569 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 TLR8Q9NR97 1041 aaKnown RBP11.69□□□□□ -0.54
CLN6-217ENST00000636964 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN6-217ENST00000636964 SYBUQ9NX95 663 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 ARHGAP42A6NI28 874 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CNTN5O94779 1100 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 PARNO95453 639 aaKnown RBP11.69□□□□□ -0.54
CLN6-217ENST00000636964 GSTA2P09210 222 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 TPH1P17752 444 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 NR1H3Q13133 447 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 BMPR2Q13873 1038 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SLC1A5Q15758 541 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 USP41Q3LFD5 358 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 LRRC8BQ6P9F7 803 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CIR1Q86X95 450 aaPredicted RBP11.69□□□□□ -0.54
CLN6-217ENST00000636964 CNTD1Q8N815 330 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 DNAAF3Q8N9W5 541 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SPATA22Q8NHS9 363 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SLC39A13Q96H72 371 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 IGSF21Q96ID5 467 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 SERAC1Q96JX3 654 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 TOX2Q96NM4 488 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CRISPLD2Q9H0B8 497 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 IGSF9Q9P2J2 1179 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 ACTL7BQ9Y614 415 aa11.69□□□□□ -0.54
CLN6-217ENST00000636964 CCDC78A2IDD5 438 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 SDR42E2A6NKP2 422 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 F7P08709 466 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 CSH1P0DML2 217 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 CSH2P0DML3 217 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 DNAJB2P25686 324 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 DYNC1I2Q13409 638 aaKnown RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 LRRC26Q2I0M4 334 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ALFQ53S48 1182 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 RAP1GAP2Q684P5 730 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 KDELC2Q7Z4H8 507 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 LCA5Q86VQ0 697 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms