RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MLLT10P55197 1068 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 PFN3P60673 137 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 ZFP36L1Q07352 338 aaKnown RBP14.85□□□□□ -0.03
CLN3-249ENST00000636685 NNTQ13423 1086 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 ESPL1Q14674 2120 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 TCEA2Q15560 299 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 FAXCQ5TGI0 409 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 KIAA1161Q6NSJ0 714 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 Q8N9G6 341 aaPredicted RBP14.85□□□□□ -0.03
CLN3-249ENST00000636685 PCDH19Q8TAB3 1148 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 NKD1Q969G9 470 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 FEM1CQ96JP0 617 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 SRRTQ9BXP5 876 aaKnown RBP14.85□□□□□ -0.03
CLN3-249ENST00000636685 SLC13A1Q9BZW2 595 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 MIS12Q9H081 205 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 TMEM8AQ9HCN3 771 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 VPS28Q9UK41 221 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 OR51B4Q9Y5P0 310 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 FADS3Q9Y5Q0 445 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 TCAF2A6NFQ2 919 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 IGLON5A6NGN9 336 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.84□□□□□ -0.03
CLN3-249ENST00000636685 PDXKO00764 312 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 PRNPP04156 253 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 PDIA4P13667 645 aaKnown RBP14.84□□□□□ -0.03
CLN3-249ENST00000636685 LIFP15018 202 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 COL8A1P27658 744 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 IRAK1P51617 712 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 CENPCQ03188 943 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 SLC35F5Q8WV83 523 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 TMEM159Q96B96 161 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 FAXDC2Q96IV6 333 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 BTN2A3PQ96KV6 586 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 TBATAQ96M53 351 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 LENG8Q96PV6 779 aaPredicted RBP14.84□□□□□ -0.03
CLN3-249ENST00000636685 CMKLR1Q99788 373 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 PRMT1Q99873 361 aaKnown RBP14.84□□□□□ -0.03
CLN3-249ENST00000636685 DOLKQ9UPQ8 538 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 ITPR3Q14573 2671 aa14.84□□□□□ -0.03
CLN3-249ENST00000636685 STMND1H3BQB6 276 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 SMAD6O43541 496 aaKnown RBP14.83□□□□□ -0.04
CLN3-249ENST00000636685 ADRB3P13945 408 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 RRM1P23921 792 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 ATP1A2P50993 1020 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 NEK3P51956 506 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 THOP1P52888 689 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 OXCT1P55809 520 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 SGCGQ13326 291 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 FHL5Q5TD97 284 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 SYPL2Q5VXT5 272 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 KRT39Q6A163 491 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 INTS8Q75QN2 995 aaKnown RBP14.83□□□□□ -0.04
CLN3-249ENST00000636685 TMPRSS9Q7Z410 1059 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 CCNJLQ8IV13 435 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 GRAMD1CQ8IYS0 662 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 ATP11CQ8NB49 1132 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 SSC4DQ8WTU2 575 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 ABHD17AQ96GS6 310 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 CCDC114Q96M63 670 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 C1QTNF2Q9BXJ5 285 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 IL36AQ9UHA7 158 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 GPR34Q9UPC5 381 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 HS3ST2Q9Y278 367 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 DAAM1Q9Y4D1 1078 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.83□□□□□ -0.04
CLN3-249ENST00000636685 RNF215Q9Y6U7 377 aa14.83□□□□□ -0.04
CLN3-249ENST00000636685 LRP4O75096 1905 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PRR19A6NJB7 356 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 MAPK13O15264 365 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 KLRC4O43908 158 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 SNAP91O60641 907 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 LEFTY1O75610 366 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 VDRP11473 427 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 CCL4P13236 92 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 KRT13P13646 458 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 GNLYP22749 145 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 ARSDP51689 593 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 KLRB1Q12918 225 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PTK2BQ14289 1009 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 C16orf72Q14CZ0 275 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 RABEP1Q15276 862 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 LACTB2Q53H82 288 aaPredicted RBP14.82□□□□□ -0.04
CLN3-249ENST00000636685 RABGAP1LQ5R372 815 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PHF19Q5T6S3 580 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 TTC39BQ5VTQ0 682 aaPredicted RBP14.82□□□□□ -0.04
CLN3-249ENST00000636685 LCLAT1Q6UWP7 414 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 FAM186BQ8IYM0 893 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 IL22RA1Q8N6P7 574 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 TFAP2BQ92481 460 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PMEPA1Q969W9 287 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 FAM149B1Q96BN6 582 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PPP1R16AQ96I34 528 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 CATSPER2Q96P56 530 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PHF12Q96QT6 1004 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 PPP1R9BQ96SB3 815 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 TNKS2Q9H2K2 1166 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 FOXD4L1Q9NU39 408 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 RAB20Q9NX57 234 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 WASF2Q9Y6W5 498 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 HIVEP3Q5T1R4 2406 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms