RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LRRC32Q14392 662 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 HNRNPA1L2Q32P51 320 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 HSF5Q4G112 596 aaPredicted RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 FNDC3BQ53EP0 1204 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 ALG1LQ6GMV1 187 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 C22orf39Q6P5X5 142 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 C4orf22Q6V702 233 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 SYDE1Q6ZW31 735 aaPredicted RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 PID1Q7Z2X4 250 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 TRMT11Q7Z4G4 463 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 MAATS1Q7Z4T9 603 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 PGBD5Q8N414 524 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 TSEN2Q8NCE0 465 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 CCDC110Q8TBZ0 833 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 FRS2Q8WU20 508 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 EDAQ92838 391 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 AGAP3Q96P47 875 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 CEP41Q9BYV8 373 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 OSBPL6Q9BZF3 934 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 PCDH9Q9HC56 1237 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 PAK5Q9P286 719 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 KLHL8Q9P2G9 620 aaPredicted RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 NDRG2Q9UN36 371 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 TARSL2A2RTX5 802 aaKnown RBP14.57□□□□□ -0.08
UPF1-211ENST00000600868 ANTXRLA6NF34 631 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 TTC34A8MYJ7 566 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 MUSKO15146 869 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 ZBTB24O43167 697 aaPredicted RBP14.57□□□□□ -0.08
UPF1-211ENST00000600868 DCXO43602 365 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 GSRP00390 522 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 ETS1P14921 441 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 CR2P20023 1033 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 CES1P23141 567 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 NTSR1P30989 418 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 CD68P34810 354 aaPredicted RBP14.57□□□□□ -0.08
UPF1-211ENST00000600868 IL12RB1P42701 662 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 CSNK1DP48730 415 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 NRLP54845 237 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 SEC13P55735 322 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 RHOAP61586 193 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 SNRPD1P62314 119 aaKnown RBP14.57□□□□□ -0.08
UPF1-211ENST00000600868 ACCSLQ4AC99 568 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 RALGPS1Q5JS13 557 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 ITPRIPL1Q6GPH6 555 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 SERPINA13PQ6UXR4 307 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 ARHGEF18Q6ZSZ5 1173 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 GLIS1Q8NBF1 620 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 GDAP1L1Q96MZ0 367 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 ACOX2Q99424 681 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 GABRG3Q99928 467 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 POLR1EQ9GZS1 481 aaKnown RBP14.57□□□□□ -0.08
UPF1-211ENST00000600868 SLC25A51Q9H1U9 297 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 TBC1D17Q9HA65 648 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 GLOD4Q9HC38 313 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 SUN2Q9UH99 717 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 STON1Q9Y6Q2 735 aa14.57□□□□□ -0.08
UPF1-211ENST00000600868 EDDM13A0A1B0GTR0 161 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 FAM187AA6NFU0 413 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 FAM170BA6NMN3 283 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 RNF40O75150 1001 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 IGSF6O95976 241 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 KRT14P02533 472 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 PRKCHP24723 683 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 RPL22P35268 128 aaKnown RBP14.56□□□□□ -0.08
UPF1-211ENST00000600868 FZD5Q13467 585 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 PTK6Q13882 451 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 UBXN2BQ14CS0 331 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 PPP1R7Q15435 360 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 PARP6Q2NL67 630 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 C2orf27AQ580R0 203 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 CARD16Q5EG05 197 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 SDE2Q6IQ49 451 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 JAMLQ86YT9 394 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 CHPFQ8IZ52 775 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 IL17RCQ8NAC3 791 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 NOA1Q8NC60 698 aaKnown RBP14.56□□□□□ -0.08
UPF1-211ENST00000600868 OR2AP1Q8NGE2 309 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 CCHCR1Q8TD31 782 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 PTPRN2Q92932 1015 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 FCRL5Q96RD9 977 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 NUDCD1Q96RS6 583 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 FOXQ1Q9C009 403 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 GBA3Q9H227 469 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 TNKS2Q9H2K2 1166 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 LMAN1LQ9HAT1 526 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 CACNA2D2Q9NY47 1150 aa14.56□□□□□ -0.08
UPF1-211ENST00000600868 MTF2Q9Y483 593 aaPredicted RBP14.56□□□□□ -0.08
UPF1-211ENST00000600868 MYO18AQ92614 2054 aaKnown RBP14.56□□□□□ -0.08
UPF1-211ENST00000600868 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 WASH3PC4AMC7 463 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 TTI1O43156 1089 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 RAD51CO43502 376 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 SLU7O95391 586 aaKnown RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 ZSCAN5DPP0CG00 497 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 ALADP13716 330 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 HLA-EP13747 358 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 FDFT1P37268 417 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 MAPK8P45983 427 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 RECQLP46063 649 aaPredicted RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 RGRP47804 291 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms