RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZCCHC9Q8N567 271 aaKnown RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 FAM71BQ8TC56 605 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 ADAMTS14Q8WXS8 1223 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 PRCCQ92733 491 aaPredicted RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 PLD4Q96BZ4 506 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 HAUS1Q96CS2 278 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 SIPA1Q96FS4 1042 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 SLC39A13Q96H72 371 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 CAMK1GQ96NX5 476 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 NAP1L3Q99457 506 aaPredicted RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 XPO7Q9UIA9 1087 aaKnown RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 ASPMQ8IZT6 3477 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 ACACAQ13085 2346 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 ANKRD11Q6UB99 2663 aaPredicted RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM72CH0Y354 149 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 BCAT2O15382 392 aaPredicted RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 TIMM44O43615 452 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 CREB3O43889 395 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 CER1O95813 267 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FTH1P19P0C7X4 201 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 ACADMP11310 421 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 GOT1P17174 413 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 IL4RP24394 825 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 AIF1P55008 147 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 KLF1Q13351 362 aaPredicted RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 NNTQ13423 1086 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM72AQ5TYM5 149 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM72DQ6L9T8 149 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 IL27RAQ6UWB1 636 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 SERPINA13PQ6UXR4 307 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM72BQ86X60 149 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 PSTKQ8IV42 348 aaKnown RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 KLHL7Q8IXQ5 586 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM217AQ8IXS0 508 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 PRELID2Q8N945 189 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 MYRIPQ8NFW9 859 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 DDI1Q8WTU0 396 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 TSC1Q92574 1164 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 RNF157Q96PX1 679 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 FAM118BQ9BPY3 351 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 ZNF670Q9BS34 389 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 CIPCQ9C0C6 399 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 DDX47Q9H0S4 455 aaKnown RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 MIR1-1HGQ9H1L0 117 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 PCED1AQ9H1Q7 454 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.97□□□□□ -0.33
UPF1-208ENST00000600012 APOBEC2Q9Y235 224 aaKnown RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 R3HDM2Q9Y2K5 976 aaKnown RBP12.97□□□□□ -0.33
UPF1-208ENST00000600012 PTPRBP23467 1997 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 BAHCC1Q9P281 2608 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 PLXNB3Q9ULL4 1909 aa12.97□□□□□ -0.33
UPF1-208ENST00000600012 GOLGA6L10A0A0M3HER8 536 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 METTL12A8MUP2 240 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 KCNU1A8MYU2 1149 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 H3BRJ5 948 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 CST8O60676 142 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 PAGE1O75459 146 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 IGLV3-27P01718 113 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 APOEP02649 317 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 EPHX1P07099 455 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 ZNF883P0CG24 379 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 PRKCHP24723 683 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 ARL4AP40617 200 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 COPAP53621 1224 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 MRPS25P82663 173 aaKnown RBP12.96□□□□□ -0.33
UPF1-208ENST00000600012 RING1Q06587 406 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 MPPE1Q53F39 396 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 ANKRD20A8PQ5CZ79 823 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 BBS12Q6ZW61 710 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 GLRX5Q86SX6 157 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 PROSER1Q86XN7 944 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 MAP7D3Q8IWC1 876 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 PQLC3Q8N755 202 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 PCDH19Q8TAB3 1148 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.96□□□□□ -0.33
UPF1-208ENST00000600012 MAIP1Q8WWC4 291 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 C1orf54Q8WWF1 131 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 ATG4AQ8WYN0 398 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 FAF2Q96CS3 445 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 CSPG4P5Q96PW8 444 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 KRT12Q99456 494 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 MAK16Q9BXY0 300 aaKnown RBP12.96□□□□□ -0.33
UPF1-208ENST00000600012 SIK2Q9H0K1 926 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 CWC15Q9P013 229 aaKnown RBP12.96□□□□□ -0.33
UPF1-208ENST00000600012 CLEC4EQ9ULY5 219 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 LHX6Q9UPM6 363 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 HBS1LQ9Y450 684 aaKnown RBP12.96□□□□□ -0.33
UPF1-208ENST00000600012 MFHAS1Q9Y4C4 1052 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 HS3ST4Q9Y661 456 aa12.96□□□□□ -0.33
UPF1-208ENST00000600012 MUC22E2RYF6 1773 aaPredicted RBP12.96□□□□□ -0.34
UPF1-208ENST00000600012 NYNRINQ9P2P1 1898 aaKnown RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 SPEGQ15772 3267 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 EFCAB8A8MWE9 144 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 CCDC188H7C350 402 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 EEF2KO00418 725 aaKnown RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 APOL1O14791 398 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 CBFA2T3O75081 653 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 PHF2O75151 1096 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 TJP3O95049 919 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 AMPD1P23109 780 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms